View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1925_low_5 (Length: 238)
Name: NF1925_low_5
Description: NF1925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1925_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2730982 - 2731203
Alignment:
| Q |
1 |
cctttcaaaacgtgccctattgatcttcggcttcctcccatcgaaccaaacatcccccagcctcttttcaagctcctcttcattgttcacctccttaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2730982 |
cctttcaaaacgtgccctattgatcttcggcttcctcccatcgaaccaaacatcccccagcctcttttcaagctcctcttcattgttcacctccttaaac |
2731081 |
T |
|
| Q |
101 |
atcacaaagtcatattttctccctcattgatccctcttttgagtaatatagactttccccacctcccatatttagcaaaaagtttccataactcttatca |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2731082 |
atcacaaaatcatattttctccctcattgatccctcttttgaggaatatagactttccccacctcccatatttagcaaaaagtttccataactcttatca |
2731181 |
T |
|
| Q |
201 |
tttttacctcatcctagaagtt |
222 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
2731182 |
tttttacctcatcttaaaagtt |
2731203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University