View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_high_10 (Length: 239)
Name: NF19260_high_10
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_high_10 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 27496663 - 27496885
Alignment:
| Q |
17 |
atgcataactggtaaatgtaatcagtgaaaaatatcataacacgcttctatcttaagatggtgagcttgcataactacacaaattcaacctgtgtggttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27496663 |
atgcataactggtaaatgtaatcagtgaaaaatatcataacacgcttctatcttaagatggtgagcttgcataactacacaaattcaacctgtgtggttt |
27496762 |
T |
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| Q |
117 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27496763 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
27496862 |
T |
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| Q |
217 |
catctggtagaacacacggagtt |
239 |
Q |
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||||||||||||||||| ||||| |
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| T |
27496863 |
catctggtagaacacaccgagtt |
27496885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 27503321 - 27503543
Alignment:
| Q |
17 |
atgcataactggtaaatgtaatcagtgaaaaatatcataacacgcttctatcttaagatggtgagcttgcataactacacaaattcaacctgtgtggttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27503321 |
atgcataactggtaaatgtaatcagtgaaaaatatcataacacgcttctatcttaagatggtgagcttgcataactacacaaattcaacctgtgtggttt |
27503420 |
T |
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| Q |
117 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
216 |
Q |
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| T |
27503421 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
27503520 |
T |
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| Q |
217 |
catctggtagaacacacggagtt |
239 |
Q |
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| T |
27503521 |
catctggtagaacacaccgagtt |
27503543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 27389158 - 27388936
Alignment:
| Q |
17 |
atgcataactggtaaatgtaatcagtgaaaaatatcataacacgcttctatcttaagatggtgagcttgcataactacacaaattcaacctgtgtggttt |
116 |
Q |
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||||||||||||||||||| ||||||||| |||| |||||| | ||||||||||||||||||||||||||| ||| |||||||||||| || |||||| |
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| T |
27389158 |
atgcataactggtaaatgtcatcagtgaagaatactataacatgtttctatcttaagatggtgagcttgcatgactgcacaaattcaacttgcatggttt |
27389059 |
T |
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| Q |
117 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27389058 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
27388959 |
T |
|
| Q |
217 |
catctggtagaacacacggagtt |
239 |
Q |
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|||||||||||||||| |||||| |
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| T |
27388958 |
catctggtagaacacaaggagtt |
27388936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 27518145 - 27518367
Alignment:
| Q |
17 |
atgcataactggtaaatgtaatcagtgaaaaatatcataacacgcttctatcttaagatggtgagcttgcataactacacaaattcaacctgtgtggttt |
116 |
Q |
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||||||||||||||||||| ||||||||| |||| |||||| | ||||||||||||||||||||||||||| ||| |||||||||||| || |||||| |
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| T |
27518145 |
atgcataactggtaaatgtcatcagtgaagaatactataacatgtttctatcttaagatggtgagcttgcatgactgcacaaattcaacttgcatggttt |
27518244 |
T |
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| Q |
117 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27518245 |
tatatggctatagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttctccaacattttcttcttcttacaactccaattg |
27518344 |
T |
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| Q |
217 |
catctggtagaacacacggagtt |
239 |
Q |
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|||||||||||||||| |||||| |
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| T |
27518345 |
catctggtagaacacaaggagtt |
27518367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 27494135 - 27494245
Alignment:
| Q |
126 |
atagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttct-ccaaca---ttttcttcttcttacaactccaattgcatct |
221 |
Q |
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|||||||||||| || |||||||| |||||||||||||||||||||| || ||||||| |||||| |||| |||||||||||||||||||||||| | |
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| T |
27494135 |
atagctttacaattggtaactttacgtaagttagagttcatcatgatataggatcttctcccaacatattttttttcttcttacaactccaattgcattt |
27494234 |
T |
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| Q |
222 |
ggtagaacaca |
232 |
Q |
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|| |||||||| |
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| T |
27494235 |
ggaagaacaca |
27494245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 27500793 - 27500903
Alignment:
| Q |
126 |
atagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttct-ccaaca---ttttcttcttcttacaactccaattgcatct |
221 |
Q |
| |
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|||||||||||| || |||||||| |||||||||||||||||||||| || ||||||| |||||| |||| |||||||||||||||||||||||| | |
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| T |
27500793 |
atagctttacaattggtaactttacgtaagttagagttcatcatgatataggatcttctcccaacatattttttttcttcttacaactccaattgcattt |
27500892 |
T |
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| Q |
222 |
ggtagaacaca |
232 |
Q |
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|| |||||||| |
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| T |
27500893 |
ggaagaacaca |
27500903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 27515585 - 27515695
Alignment:
| Q |
126 |
atagctttacaaagggaaactttacataagttagagttcatcatgatagagtatcttct-ccaaca---ttttcttcttcttacaactccaattgcatct |
221 |
Q |
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|||||||||||| || |||||||| |||||||||||||||||||||| || ||||||| |||||| |||| |||||||||||||||||||||||| | |
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| T |
27515585 |
atagctttacaattggtaactttacgtaagttagagttcatcatgatataggatcttctcccaacatattttttttcttcttacaactccaattgcattt |
27515684 |
T |
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| Q |
222 |
ggtagaacaca |
232 |
Q |
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|| |||||||| |
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| T |
27515685 |
ggaagaacaca |
27515695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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