View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_high_11 (Length: 233)
Name: NF19260_high_11
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 3916146 - 3915944
Alignment:
| Q |
14 |
atgaacaaaaatagtaaagttaaaggtnnnnnnngtgaagcaaatattatctatcctacaaagctatgtagagaaaatacatttagagtcacgaaatcca |
113 |
Q |
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| T |
3916146 |
atgaacaaaaatagtaaagttaaaggtaaaaaaagtgaagcaaatattatctatcctacaaagctatgtagagaaaataaatttagagtcacgaaatcca |
3916047 |
T |
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| Q |
114 |
aacatcaagctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtagt |
213 |
Q |
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| T |
3916046 |
aacatcaagctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtact |
3915947 |
T |
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| Q |
214 |
ttc |
216 |
Q |
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||| |
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| T |
3915946 |
ttc |
3915944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 16035451 - 16035546
Alignment:
| Q |
121 |
agctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttc |
216 |
Q |
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| T |
16035451 |
agctttttgctcattaatatctataagaaggttcccaaactctcttgtcttcaatttctatatgttagatatgagccaccttgtgccagtactttc |
16035546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 16052207 - 16052302
Alignment:
| Q |
121 |
agctttttggtcatccatatctataactatattcccgaactcttcggtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttc |
216 |
Q |
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| T |
16052207 |
agctttttgctcattaatatctataagaaggttcccaaactctcttgtcttcaatttctatatgttggatatgatccaccttgtgccagtactttc |
16052302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 16061608 - 16061653
Alignment:
| Q |
171 |
tcaatttcgatatgttggatatgagccaccttgcgccagtagtttc |
216 |
Q |
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| T |
16061608 |
tcaatttctatatgttgaatatgagccaccttgtgccagtactttc |
16061653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 52651341 - 52651390
Alignment:
| Q |
167 |
gtcatcaatttcgatatgttggatatgagccaccttgcgccagtagtttc |
216 |
Q |
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|||||||||||| ||||| | ||||||||||||||||||||||| |||| |
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| T |
52651341 |
gtcatcaatttctatatgaggaatatgagccaccttgcgccagtactttc |
52651390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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