View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_high_3 (Length: 527)
Name: NF19260_high_3
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 180 - 424
Target Start/End: Original strand, 44688520 - 44688764
Alignment:
| Q |
180 |
ttaaaatagtcgtatcaaccattaagttaagattagatggttgggattgaaaactacatgacttaaattatgcaccaaatccaaatagagtgggaggagg |
279 |
Q |
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| T |
44688520 |
ttaaaatagtcgtaccaaccattaagttaagattagatggttgggattgaaaactacatgacttaaattatgcaccaaatccaaatagagtgggaggagg |
44688619 |
T |
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| Q |
280 |
tatccattaattctctcatatgtcttaatcatgaaatttgtattttcatgatctaatgccgccatatatacaccacttcatgaataaaaattagtcacgt |
379 |
Q |
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| T |
44688620 |
tatccattaattctctcatatgtcttaatcatgaaatttgtattttcatgatctaatgccgccatatatacaccacttcatgaataaaaattagtcacgt |
44688719 |
T |
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| Q |
380 |
atctttttctatcgttctcatttcttaatgtctcaacaaaggtag |
424 |
Q |
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| T |
44688720 |
atctttttctatcgttctcatttcttaatgtctcaacaaaggtag |
44688764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44688379 - 44688465
Alignment:
| Q |
1 |
caaaaaacacgcagttacatgtagcttttgaacttacatattaatataagttcgtatagttcatataatactaataataacaactca |
87 |
Q |
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| T |
44688379 |
caaaaaacacgcagttacacgtagcttttgaacttacatattaatataagttcgtatagttcatataatactaataataacaactca |
44688465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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