View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19260_high_7 (Length: 302)
Name: NF19260_high_7
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_high_7 |
 | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0108 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 16700 - 16920
Alignment:
| Q |
19 |
ggagaaattggaattgtgttacaagctccaaattatgttccgtatagttcaaaatcagaggatgtagatgcttctaatagactcatggagtttagttttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
16700 |
ggagaaattggaattgtgttacaagctccaaattatgttccgtatagttcaaaatcagaggatgtagatgctgctaatagactaatggattttagttttg |
16799 |
T |
|
| Q |
119 |
gatggttagtgaaattatcttaccatgtgataaacacctctttcttatttgttaannnnnnnnnnnnnngagggaagggaaaatttatcattaattaaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
16800 |
gatggttagtgaaattatcttaccatgtgataaacacctctttcttatttggtaattttttaaaaaaaaatagggagggaaaatttatcattaattaaag |
16899 |
T |
|
| Q |
219 |
tgtcactaatgattatttaca |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16900 |
tgtcactaatgattatttaca |
16920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 12414802 - 12414912
Alignment:
| Q |
19 |
ggagaaattggaattgtgttacaagctccaaattatgttccgtatagttcaaaatcagaggatgtagatgcttctaatagactcatggagtttagttttg |
118 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||| |||||| |||||||||||| ||| ||||| |||||| || | ||| | ||||| || | || || |
|
|
| T |
12414802 |
ggagaaattggacttgttttacaagctcaaaattttgttccctatagttcaaaagaagaagatgtggatgctgctcaaagattaatggatttcacttatg |
12414901 |
T |
|
| Q |
119 |
gatggttagtg |
129 |
Q |
| |
|
||||||||||| |
|
|
| T |
12414902 |
gatggttagtg |
12414912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 15507434 - 15507388
Alignment:
| Q |
196 |
ggaaaatttatcattaattaaagtgtcactaatgatt-atttacaat |
241 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
15507434 |
ggaaaatttatcattaattaaagtgacactaataattaatttacaat |
15507388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University