View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_high_9 (Length: 245)
Name: NF19260_high_9
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 15688760 - 15688540
Alignment:
| Q |
14 |
atcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagcttcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttga |
113 |
Q |
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| T |
15688760 |
atcaaacaagaccatgaacatgtttatgatagacagaaagagttaaagctgcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttga |
15688661 |
T |
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| Q |
114 |
ccaaagtcccaaagatttttattcatgataagattcataaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagattttggacc |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15688660 |
ccaaagtcccaaagattttcattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagattttggacc |
15688561 |
T |
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| Q |
214 |
tttatttaccaacacaggttc |
234 |
Q |
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|||||||||||||||| |||| |
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| T |
15688560 |
tttatttaccaacacaagttc |
15688540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 15682420 - 15682200
Alignment:
| Q |
14 |
atcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagcttcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttga |
113 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15682420 |
atcaaacaagaacatgaacatgtttatgatagacagaaagagttaaagcttcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttga |
15682321 |
T |
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| Q |
114 |
ccaaagtcccaaagatttttattcatgataagattcataaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagattttggacc |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15682320 |
ccaaagtcccaaagattttcattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagattttggtcc |
15682221 |
T |
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| Q |
214 |
tttatttaccaacacaggttc |
234 |
Q |
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|||||||||||||||| |||| |
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| T |
15682220 |
tttatttaccaacacaagttc |
15682200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 15684464 - 15684254
Alignment:
| Q |
14 |
atcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagcttcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctggtttga |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15684464 |
atcaaacaagaccgtgaacatgtttatgatagacacaaagagttaatgcttcttgatgaatcaaaagaaggtgtaaaaggacttgttgatgctggtttga |
15684365 |
T |
|
| Q |
114 |
ccaaagtcccaaagatttttattcatgataagattcataaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagattttggacc |
213 |
Q |
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||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15684364 |
ccaaattcccaaagattttcattcatgataaggttcatgaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagactttggacc |
15684265 |
T |
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| Q |
214 |
tttatttacca |
224 |
Q |
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||||||||||| |
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| T |
15684264 |
tttatttacca |
15684254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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