View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19260_low_1 (Length: 975)
Name: NF19260_low_1
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 947; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 947; E-Value: 0
Query Start/End: Original strand, 3 - 965
Target Start/End: Original strand, 29981017 - 29981979
Alignment:
| Q |
3 |
gttttaggatcatattgttggaaaattataactgatgcaaatgtagaaaactcagaagaagccaaatagcttccaacaggaccaagctcagcacaatcac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981017 |
gttttaggatcatattgttggaaaattataactgatgcaaatgtagaaaactcagaagaagccaaatagcttccaacaggaccaagctcagcacaatcac |
29981116 |
T |
|
| Q |
103 |
ttccatctagcaaaggtgctactggaggcattctacctgccaaaatcaaattgctcttattcctttcgctcaacacagttacaatatcttctttactttc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981117 |
ttccatctagcaaaggtgctactggaggcattctacctgccaaaatcaaattgctcttattcctttcgctcaacacagttacaatatcttctttactttc |
29981216 |
T |
|
| Q |
203 |
aaccaacctttcctcataaactatagattcttcactcttacaacaaacacctaaaaactctgaccaaaattgatcatcttcttgtttatcttcatcaggt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981217 |
aaccaacctttcctcataaactatagattcttcactcttacaacaaacacctaaaaactctgaccaaaattgatcatcttcttgtttatcttcatcaggt |
29981316 |
T |
|
| Q |
303 |
gtgttaccatctgacacttttattacttttctatctctgtcagctgttataccaatcaatttggcaccaaatgccaatgttttacctggcggagttataa |
402 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981317 |
gtgttaccatctgacacctttattacttttctatctctgtcagctgttataccaatcaatttggcaccaaatgccaatgttttacctggcggagttataa |
29981416 |
T |
|
| Q |
403 |
attttaaaacagtgagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaac |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981417 |
attttaaaacagtgagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaac |
29981516 |
T |
|
| Q |
503 |
attgtaagaaacatcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaactgagcaaggagcatggctaagtacaagtcca |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29981517 |
attgtaagaaacatcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatggctaagtacaagtcca |
29981616 |
T |
|
| Q |
603 |
ttcattacgcgaaacgagtgtcctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtg |
702 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981617 |
ttcattacgcgaaacgagtgccctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtg |
29981716 |
T |
|
| Q |
703 |
cacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaat |
802 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981717 |
cacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaat |
29981816 |
T |
|
| Q |
803 |
taccatttggtctttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgag |
902 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981817 |
taccatttggtctttgttgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgag |
29981916 |
T |
|
| Q |
903 |
agttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctcttgatgat |
965 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981917 |
agttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctcttgatgat |
29981979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 731 - 953
Target Start/End: Complemental strand, 8156284 - 8156063
Alignment:
| Q |
731 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
830 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8156284 |
attgagagatgaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgt |
8156185 |
T |
|
| Q |
831 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
930 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8156184 |
tttttgttcc-aaagggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
8156086 |
T |
|
| Q |
931 |
ataactttcctcgctttcgtgtt |
953 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
8156085 |
ataactttgctcgctttcgtgtt |
8156063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 416 - 957
Target Start/End: Complemental strand, 51405268 - 51404730
Alignment:
| Q |
416 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
515 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |||| || | |||||| ||||| ||||||||| || | ||||| |
|
|
| T |
51405268 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacaacaaccttaaaggaaact |
51405169 |
T |
|
| Q |
516 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaactgagcaaggagcatggctaagtacaagtccattcattacgcgaa |
615 |
Q |
| |
|
||||| || || |||||| |||| ||||| || || ||||||| |||||||||||| || ||||| ||||| || | ||||| |||||||||| ||| |
|
|
| T |
51405168 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacaagctcattcattacatgaa |
51405069 |
T |
|
| Q |
616 |
acgagtgtcctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtgcacttgaacaaat |
715 |
Q |
| |
|
| || ||||||||||| ||||| |||||||| | || |||||||| || || ||||| || || |||| | |||||||| || ||||| | |||||| |
|
|
| T |
51405068 |
atgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatcgaggcacgcttttgatgagcactagtacaaat |
51404969 |
T |
|
| Q |
716 |
gtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtct |
815 |
Q |
| |
|
|||||||| ||||| |||||| ||||| |||||||| ||||||||||||||| | || | |||||| | ||| || || || |||||||| ||| |
|
|
| T |
51404968 |
atcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatct |
51404869 |
T |
|
| Q |
816 |
ttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagt |
915 |
Q |
| |
|
| |||| |||||||||||||||||| |||| ||||| || | ||| || |||||||| | || ||||||| |||||||||||||||||| |||| |
|
|
| T |
51404868 |
t---catcattttgttttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagt |
51404772 |
T |
|
| Q |
916 |
gcattgcatatatacataactttcctcgctttcgtgttcctc |
957 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||| ||||||| |
|
|
| T |
51404771 |
gcattgcatagatacagagtcttcctcgctttcgggttcctc |
51404730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 8156322 - 8156284
Alignment:
| Q |
453 |
tacgcaagtgcttctcgatcatcacatcctccaaagaaa |
491 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
8156322 |
tacgcaagtgcttcgcgatcatcacatcctccgaagaaa |
8156284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 731 - 965
Target Start/End: Complemental strand, 7675006 - 7674772
Alignment:
| Q |
731 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
830 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7675006 |
attgagagatgaaattgttgtcataggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
7674907 |
T |
|
| Q |
831 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
930 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7674906 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattgcatatatac |
7674807 |
T |
|
| Q |
931 |
ataactttcctcgctttcgtgttcctcttgatgat |
965 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7674806 |
acaactttcctcgctttcgtgttcctcttgatgat |
7674772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 731 - 965
Target Start/End: Original strand, 36613439 - 36613673
Alignment:
| Q |
731 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
830 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36613439 |
attgagagatgaaattgttgtcacaggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
36613538 |
T |
|
| Q |
831 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
930 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36613539 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
36613638 |
T |
|
| Q |
931 |
ataactttcctcgctttcgtgttcctcttgatgat |
965 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36613639 |
acaactttcctcgctttcgtgttcctcttgatgat |
36613673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 731 - 965
Target Start/End: Original strand, 25523662 - 25523896
Alignment:
| Q |
731 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
830 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25523662 |
attgagagatgaaattgttgtcataggacgaacaatgacactacttaaatgtccataagcttcaaatgcaattaccatttggtcttttttgtcatgttgt |
25523761 |
T |
|
| Q |
831 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
930 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25523762 |
tttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattgcatatatac |
25523861 |
T |
|
| Q |
931 |
ataactttcctcgctttcgtgttcctcttgatgat |
965 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
25523862 |
acaactttccttgctttcgtgttcctcttgatgat |
25523896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 935 - 965
Target Start/End: Complemental strand, 47370132 - 47370102
Alignment:
| Q |
935 |
ctttcctcgctttcgtgttcctcttgatgat |
965 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47370132 |
ctttcctcgctttcgtgttcctcttgatgat |
47370102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University