View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_low_2 (Length: 700)
Name: NF19260_low_2
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 683
Target Start/End: Original strand, 25741472 - 25742156
Alignment:
| Q |
1 |
aagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatagtatagtatcttcatagcttcttgtgtatt |
100 |
Q |
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| T |
25741472 |
aagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatag-----tatcttcatagcttcttgtgtatt |
25741566 |
T |
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| Q |
101 |
cgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaa |
200 |
Q |
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| T |
25741567 |
cgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaa |
25741666 |
T |
|
| Q |
201 |
tcaaagcaatattaacaggcataggctcaagagagccgtgaaaatacaatgaagtttttgttctgcactgccgtaccacaatctgtcatattctcatggc |
300 |
Q |
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| T |
25741667 |
tcaaagcaatattaacaggcataggctcaagagagccgtgaaaatacaatgaagtttttgttctgcactgcagtaccacaatctgtcgtattctcatggc |
25741766 |
T |
|
| Q |
301 |
taaaattatggatcagatgacagaacaaacaattagggcaaaaataacttcacaag-nnnnnnnnnnnnnnnnnnnncagtagttgcaaggtccacaaaa |
399 |
Q |
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| T |
25741767 |
taaaattatgaatcagatgacagaacaaacaattagggcaaaaataacttcacaagaacaaaagaagtaaaaaaaaacagtagttgcaaggtccacaaaa |
25741866 |
T |
|
| Q |
400 |
tatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaatgagcatattatgcagttcctataatatactgcatgtttt |
499 |
Q |
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| T |
25741867 |
tatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaaggagcatattatgcagttcctataatatactgcatgtttt |
25741966 |
T |
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| Q |
500 |
gcttatagttttttcacttcacttgatacaagttaaaatggattctgaaaaactgccagaaatcagtaacaatttatttaattagctaatagc------n |
593 |
Q |
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| T |
25741967 |
gcttatagttttttcacttcacttgatacaagttaaaatggattctgaaaaactgccagaaatcagtaacaatttatttaattagctaatagcaaaaaaa |
25742066 |
T |
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| Q |
594 |
nnnnnnngcatattttggtaaaaattgtgaatcatatcactaattcaattagttaaaatagcttataattttttgagggaaccataaaat |
683 |
Q |
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| T |
25742067 |
aagaaaaacatattttggtaaaaattgtgaatcatatcactaattcaattagtcaaaatagcttataattttttgagggaaccataaaat |
25742156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 377 - 567
Target Start/End: Original strand, 25745399 - 25745588
Alignment:
| Q |
377 |
cagtagttgcaaggtccacaaaatatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaatgagcatattatgcagt |
476 |
Q |
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| T |
25745399 |
cagtagttgcaaggtccacaaa-tatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaatgagcattttatgcagt |
25745497 |
T |
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| Q |
477 |
tcctataatatactgcatgttttgcttatagttttttcacttcacttgatacaagttaaaatggattctgaaaaactgccagaaatcagta |
567 |
Q |
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| T |
25745498 |
tcctataatacactgcatgttttgcttatagctttttcacttcacttgatacaaattaaaatggattctgaaaaactgccagaaatcagta |
25745588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 25745006 - 25745143
Alignment:
| Q |
1 |
aagtctcattgagacactttttggcttcattgaatgttatgaaa-taagaatgatgaaggggattgacatagtatagtatcttcatagcttcttgtgtat |
99 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | |
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| T |
25745006 |
aagtcttattgagacactttttggcttcattaaatgttatgaaagtaagaatgatgaagaggattgac-----ctagtatcttcatagcttcttgtgtgt |
25745100 |
T |
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| Q |
100 |
tcgcgcgatgtagatgattcgcatcgatccttgtattttctgc |
142 |
Q |
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| T |
25745101 |
tcgcgcaatatagatgattcgtgttgatccttgtattttctgc |
25745143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 25745220 - 25745307
Alignment:
| Q |
144 |
gaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaatcaaagcaatattaacaggcataggctcaag |
231 |
Q |
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| T |
25745220 |
gaacttctaacttaagacaattagtttccatttctcttccttgtattcctaataaaatcaaagaatttttatcaagcgtaggctcaag |
25745307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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