View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_low_4 (Length: 422)
Name: NF19260_low_4
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 189 - 399
Target Start/End: Complemental strand, 3916435 - 3916224
Alignment:
| Q |
189 |
agagttgctaactaacaacaggttagaaccaaattacacatgtactgtttattttctaatatatacttttgcctttgcagcacaccagtgctattgttt- |
287 |
Q |
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| T |
3916435 |
agagttgctaactaacaacaggttagaaccaaattacacatgtactgattattttctaatatatacttttgcctttgcagcacaccagtgctattgtttt |
3916336 |
T |
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| Q |
288 |
attaacaaaggcgcctcctcattacaatttctctagtatgttaattttatggctttcaataatgtggcccttttctaacataatgaacacataacttata |
387 |
Q |
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| T |
3916335 |
attaacaaaggcgcctcctcattacaatttctctagtatgttaattttatggctttcaataatgtggcccttttctaacataatgaacacataacttata |
3916236 |
T |
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| Q |
388 |
tacatgacatgc |
399 |
Q |
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|||||||||||| |
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| T |
3916235 |
tacatgacatgc |
3916224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 3916658 - 3916469
Alignment:
| Q |
1 |
taaactaatgggagctaaactgaatctaaacagatgcaaatgaaatgaagaaaatgcacaagctttacctttcaaatattcgtgggaattgagaaataca |
100 |
Q |
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| T |
3916658 |
taaactaatgggagctaaactgaatctaaacagattcaaatgaaatgaagaaaatgcacaagctttacctttcaaatattcgcgggaattgagaaataca |
3916559 |
T |
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| Q |
101 |
gcatttcaagatcaatttccagtcacnnnnnnntcattctttctttctctttaccaaattgaagaccaaaaaaccagatacagaaccaag |
190 |
Q |
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| T |
3916558 |
acatttcaaaatcaatttccagtcacaaaaaaatcattctttctttctctttaccaaattgaagaccaaaaaaccagatacagaaccaag |
3916469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 23639770 - 23639612
Alignment:
| Q |
16 |
taaactgaatctaaacagatgcaaatgaaatgaagaaaatgcacaagctttacctttcaaatattcgtgggaattgagaaatacagcatttcaagatcaa |
115 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||| ||||||||||||| | | ||| |||||| | |
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| T |
23639770 |
taaacagaaactaaacagatgcaaatgaaatgaagaaaatgcacaaacttaacctttccaatactcgcaggaattgagaaatctaactttttaagatcga |
23639671 |
T |
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| Q |
116 |
tttccagtcacnnnnnnntcattctttctttctctttaccaaattgaagaccaaaaaac |
174 |
Q |
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||| ||||||| |||| ||||||||||| ||||||| ||||||||| ||||| |
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| T |
23639670 |
tttacagtcacacaatgatcatcatttctttctctctaccaaaatgaagaccacaaaac |
23639612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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