View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_low_6 (Length: 361)
Name: NF19260_low_6
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_low_6 |
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| [»] chr7 (7 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 27497281 - 27496926
Alignment:
| Q |
6 |
atgaatagtacaaccgtttataactaagtcagtcatcttgtttgaagggtttcaccacaaattgctgatacacatatctcatttgtaaaatcatggatgg |
105 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27497281 |
atgaatagtataaccgtttataactaagtcagtcatcttgtttgaagggtttcaccacaaattgctgatacacatatctcatttgtaaaatcatggatgg |
27497182 |
T |
|
| Q |
106 |
atgcacacatagaggatgctgaaaagtatcttagaatgccagttgttttttctgagtttggtgtatcatccaaggatcctggctacaactcaacatatag |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27497181 |
atgcacacatagaggatgctgaaaagtatcttggaatgccagttgttttttctgagtttggtgtatcatccaaggatcctggctacaactcaacatatag |
27497082 |
T |
|
| Q |
206 |
agacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagtggagctggaagccttttgtggcagggatttcctgaagga |
305 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27497081 |
agacacactaataagcactgtttacagcgcagtcctaaactccacaaagaaaggagggagtggagctggaagccttttgtggcaggtatttcctgaagga |
27496982 |
T |
|
| Q |
306 |
accgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27496981 |
accgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
27496926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 27518763 - 27518408
Alignment:
| Q |
6 |
atgaatagtacaaccgtttataactaagtcagtcatcttgtttgaagggtttcaccacaaattgctgatacacatatctcatttgtaaaatcatggatgg |
105 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27518763 |
atgaatagtacaacagtttctaactaagtcaattatcttgtttgaagggtttcacaacaaattgctgatacacatatcccatttgtaaaatcatggatgg |
27518664 |
T |
|
| Q |
106 |
atgcacacatagaggatgctgaaaagtatcttagaatgccagttgttttttctgagtttggtgtatcatccaaggatcctggctacaactcaacatatag |
205 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27518663 |
atgcacacattgaggatgctgaaaagtatcttggaatgccagttattttttctgagtttggtgtatcatccaaggatcctggctacaactcaacatatag |
27518564 |
T |
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| Q |
206 |
agacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagtggagctggaagccttttgtggcagggatttcctgaagga |
305 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
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| T |
27518563 |
agacacactaataagcactgtttacagctcaatcctaaactccacaaagaaaggagggagtggggctggaagccttttgtggcaggtattttctgaagga |
27518464 |
T |
|
| Q |
306 |
accgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
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| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
27518463 |
atggataatatggatgatggttatgctattgttttctcaaaatctccttccacttc |
27518408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 27388541 - 27388895
Alignment:
| Q |
6 |
atgaatagtacaaccgtttataactaagtcagtcatcttgtttgaagggtttcaccacaaattgctgatacacatatctcatttgtaaaatcatggatgg |
105 |
Q |
| |
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|||||||||||| || |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27388541 |
atgaatagtacagtcgcttataactaagtcaattatcttgtttgaagggtttcactacaaattgctgatacacatatctcatttgtaaaatcatggatgg |
27388640 |
T |
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| Q |
106 |
atgcacacatagaggatgctgaaaagtatcttagaatgccagttgttttttctgagtttggtgtatcatccaaggatcctggctacaactcaacatatag |
205 |
Q |
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|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27388641 |
atgcacacattgaggatactgaaaagtatcttggaatgccagttgttttttctgagtttggtgtatcatccaaggatc-tggctacaactcaacatatag |
27388739 |
T |
|
| Q |
206 |
agacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagtggagctggaagccttttgtggcagggatttcctgaagga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
27388740 |
agacacactaataagcactgtttacagctcaatcctaaactccacaaagaaaggagggagtggagctggaagccttttgtggcaggtattttttgaagga |
27388839 |
T |
|
| Q |
306 |
accgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
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| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
27388840 |
atggataatatggatgatggttatgctattgttttctcaaaatctccttccacttc |
27388895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 361
Target Start/End: Complemental strand, 27494488 - 27494293
Alignment:
| Q |
167 |
tgtatcatccaaggatcctggctacaactcaacatatagagacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagt |
266 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||| | |||||||| || |||||||||||||||||| |
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| T |
27494488 |
tgtatcttccaagaatcctggctacaactcaacatatagagacacattaataagcaccgttaacagttccatcctaaattcaacaaagaaaggagggagt |
27494389 |
T |
|
| Q |
267 |
ggagctggaagccttttgtggcagggatttcctgaagg---aaccgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
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|||||||||||||| ||||||||| || ||||||| ||| |||||||||||||| || ||||| |||||||||||||||| ||||||||||| |
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| T |
27494388 |
ggagctggaagcctcgtgtggcaggtgttatctgaaggattaacggataatatggatgatggttatgc--ttgttttctcaaaatccccttccacttc |
27494293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 361
Target Start/End: Complemental strand, 27501146 - 27500951
Alignment:
| Q |
167 |
tgtatcatccaaggatcctggctacaactcaacatatagagacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagt |
266 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||| | |||||||| || |||||||||||||||||| |
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| T |
27501146 |
tgtatcttccaagaatcctggctacaactcaacatatagagacacattaataagcaccgttaacagttccatcctaaattcaacaaagaaaggagggagt |
27501047 |
T |
|
| Q |
267 |
ggagctggaagccttttgtggcagggatttcctgaagg---aaccgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||| ||| |||||||||||||| || ||||| |||||||||||||||| ||||||||||| |
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| T |
27501046 |
ggagctggaagcctcgtgtggcaggtgttatctgaaggattaacggataatatggatgatggttatgc--ttgttttctcaaaatccccttccacttc |
27500951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 361
Target Start/End: Complemental strand, 27515938 - 27515743
Alignment:
| Q |
167 |
tgtatcatccaaggatcctggctacaactcaacatatagagacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagt |
266 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||| | |||||||| || |||||||||||||||||| |
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| T |
27515938 |
tgtatcttccaagaatcctggctacaactcaacatatagagacacattaataagcaccgttaacagttccatcctaaattcaacaaagaaaggagggagt |
27515839 |
T |
|
| Q |
267 |
ggagctggaagccttttgtggcagggatttcctgaagg---aaccgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||| ||| |||||||||||||| || ||||| |||||||||||||||| ||||||||||| |
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| T |
27515838 |
ggagctggaagcctcgtgtggcaggtgttatctgaaggattaacggataatatggatgatggttatgc--ttgttttctcaaaatccccttccacttc |
27515743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 27503618 - 27503584
Alignment:
| Q |
327 |
tatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
27503618 |
tatgctattgttttctcaaaatctccttccacttc |
27503584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 67 - 361
Target Start/End: Original strand, 282373 - 282667
Alignment:
| Q |
67 |
ttgctgatacacatatctcatttgtaaaatcatggatggatgcacacatagaggatgctgaaaagtatcttagaatgccagttgttttttctgagtttgg |
166 |
Q |
| |
|
||||||||| |||||| ||||||| || || |||||||| || |||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||| |
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|
| T |
282373 |
ttgctgatagccatatcccatttgtgaagtcttggatggaagcccacatagatgatgctgaaaagtatcttggaatgccggttgtttttggtgagtttgg |
282472 |
T |
|
| Q |
167 |
tgtatcatccaaggatcctggctacaactcaacatatagagacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagt |
266 |
Q |
| |
|
|||||| | || |||||||| || || |||||||||||||| ||||| |||| ||||| |||| |||| |||||||| |||||||||||||| ||| |
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|
| T |
282473 |
tgtatctgcaaaagatcctggttataattcaacatatagagatacacttataaatactgtgtacaagacaattctaaactctacaaagaaaggaggtagt |
282572 |
T |
|
| Q |
267 |
ggagctggaagccttttgtggcagggatttcctgaaggaaccgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| ||||| ||| | |||||||| || ||||| |||||| |||||||| ||||||| ||||| |
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| T |
282573 |
ggggctggaagccttttgtggcagttctttcctgatggaacagattacatggatgatggttatgcaattgttctctcaaaagctccttctacttc |
282667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 67 - 361
Target Start/End: Complemental strand, 633479 - 633185
Alignment:
| Q |
67 |
ttgctgatacacatatctcatttgtaaaatcatggatggatgcacacatagaggatgctgaaaagtatcttagaatgccagttgttttttctgagtttgg |
166 |
Q |
| |
|
||||||||| |||||| ||||||| || || |||||||| || |||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
633479 |
ttgctgatagccatatcccatttgtgaagtcttggatggaagcccacatagatgatgctgaaaagtatcttggaatgccggttgtttttggtgagtttgg |
633380 |
T |
|
| Q |
167 |
tgtatcatccaaggatcctggctacaactcaacatatagagacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagt |
266 |
Q |
| |
|
|||||| | || |||||||| || || |||||||||||||| ||||| |||| ||||| |||| |||| |||||||| |||||||||||||| ||| |
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| T |
633379 |
tgtatctgcaaaagatcctggttataattcaacatatagagatacacttataaatactgtgtacaagacaattctaaactctacaaagaaaggaggtagt |
633280 |
T |
|
| Q |
267 |
ggagctggaagccttttgtggcagggatttcctgaaggaaccgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| ||||| ||| | |||||||| || ||||| |||||| |||||||| ||||||| ||||| |
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| T |
633279 |
ggggctggaagccttttgtggcagttctttcctgatggaacagattacatggatgatggttatgcaattgttctctcaaaagctccttctacttc |
633185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 67 - 361
Target Start/End: Complemental strand, 819282 - 818988
Alignment:
| Q |
67 |
ttgctgatacacatatctcatttgtaaaatcatggatggatgcacacatagaggatgctgaaaagtatcttagaatgccagttgttttttctgagtttgg |
166 |
Q |
| |
|
||||||||| |||||| ||||||| || || |||||||| || |||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
819282 |
ttgctgatagccatatcccatttgtgaagtcttggatggaagcccacatagatgatgctgaaaagtatcttggaatgccggttgtttttggtgagtttgg |
819183 |
T |
|
| Q |
167 |
tgtatcatccaaggatcctggctacaactcaacatatagagacacactaataagcactgtttacagcgcaatcctaaactccacaaagaaaggagggagt |
266 |
Q |
| |
|
|||||| | || |||||||| || || |||||||||||||| ||||| |||| ||||| |||| |||| |||||||| |||||||||||||| ||| |
|
|
| T |
819182 |
tgtatctgcaaaagatcctggttataattcaacatatagagatacacttataaatactgtgtacaagacaattctaaactctacaaagaaaggaggtagt |
819083 |
T |
|
| Q |
267 |
ggagctggaagccttttgtggcagggatttcctgaaggaaccgataatatggatgacggctatgctattgttttctcaaaatctccttccacttc |
361 |
Q |
| |
|
|| ||||||| ||||||||||||| |||||||| ||||| ||| | |||||||| || ||||| |||||| |||||||| ||||||| ||||| |
|
|
| T |
819082 |
ggggctggaacccttttgtggcagttctttcctgatggaacagattacatggatgatggttatgcaattgttctctcaaaagctccttctacttc |
818988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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