View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19260_low_8 (Length: 249)
Name: NF19260_low_8
Description: NF19260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19260_low_8 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 21076296 - 21076056
Alignment:
| Q |
11 |
cagagacacacctgattataatgaaacccgataatggtgtatgaatcgactgtaaaca--taaagattcaagaaccaatagcccctgcaacaaaagcatc |
108 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
21076296 |
cagagacacgcctgattataatgaaacccgagaatggtgtatgaatcgactataaacacataaagattcaagaaccaatagcccctgcaactaaagcatc |
21076197 |
T |
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| Q |
109 |
cgctttactgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatcccaacctttgaaactcgacatagaatccaaccgccaatacg |
208 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21076196 |
agctttaccgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatcccaacctttgaaactggacatagaatccaaccgccaatacg |
21076097 |
T |
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| Q |
209 |
gttgcaaatccatcattccaccacttaccacgacgaacctc |
249 |
Q |
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| T |
21076096 |
gttgcaaatccatcaatccaccacttaccacgacgaacctc |
21076056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 21022044 - 21021804
Alignment:
| Q |
11 |
cagagacacacctgattataatgaaacccgataatggtgtatgaatcgactgt--aaacataaagattcaagaaccaatagcccctgcaacaaaagcatc |
108 |
Q |
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|||||||||||||||||||||| ||||| || |||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21022044 |
cagagacacacctgattataataaaacctgagaatggtgtatgattcgactgccgacacataaagatttaagaaccaatagcccctgcaacaaaagcatc |
21021945 |
T |
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| Q |
109 |
cgctttactgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatcccaacctttgaaactcgacatagaatccaaccgccaatacg |
208 |
Q |
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||||||| ||||||| |||||||| |||||| |||||||| || |||||||| |||||||| |||||||||| ||||||||||| ||| |||| ||| |
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| T |
21021944 |
agctttaccgacccttcggagtccaacccaagcgagaaatattgttattaaacctgatcccaagctttgaaactggacatagaatctgaccaccaacacg |
21021845 |
T |
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| Q |
209 |
gttgcaaatccatcattccaccacttaccacgacgaacctc |
249 |
Q |
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| T |
21021844 |
gatgcaaaaccattagtccaccacctaccgcgacgaacctc |
21021804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 5474166 - 5473950
Alignment:
| Q |
35 |
aacccgataatggtgtatgaatcgactgtaaacat--aaagattcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtcc |
132 |
Q |
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||||||| |||||||||||||| |||||| |||| | ||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
5474166 |
aacccgagaatggtgtatgaattgactgttaacaccgagagattcaagaaccaaaagcccctgcaacaaaagcaacagctttaccgaccctttcgagtct |
5474067 |
T |
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| Q |
133 |
aaaccaagcaagaaatatcgtcattaaacccgatcccaacctttgaaactcgacatagaatccaaccgccaatacggttgcaaatccatcattccaccac |
232 |
Q |
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||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||| ||||| | ||||||| ||||||| | |||||||| |||||||| |
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| T |
5474066 |
aaaccaagcaagaaatatcttcattaaaaccgatcccaagctttgaaactggacattgaatcgacccgccaacacggttgtagatccatcagtccaccac |
5473967 |
T |
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| Q |
233 |
ttaccacgacgaacctc |
249 |
Q |
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| ||| ||||||||||| |
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| T |
5473966 |
tcaccgcgacgaacctc |
5473950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 249
Target Start/End: Original strand, 13167611 - 13167810
Alignment:
| Q |
52 |
tgaatcgactgtaaacataaaga--ttcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtccaaaccaagcaagaaata |
149 |
Q |
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|||||||||||| |||| | ||| ||||||||| || ||||| ||||||||||||| | ||||||| || ||||| ||||||||||||||||||||||| |
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| T |
13167611 |
tgaatcgactgtcaacacagagaaattcaagaacgaaaagcccttgcaacaaaagcagcagctttaccgatccttttgagtccaaaccaagcaagaaata |
13167710 |
T |
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| Q |
150 |
tcgtcattaaacccgatcccaacctttgaaactcgacatagaatccaaccgccaatacggttgcaaatccatcattccaccacttaccacgacgaacctc |
249 |
Q |
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|| |||||||| || |||| || |||||||||| ||||| ||||| || |||| |||| |||| |||||||| ||||||||| ||| |||||||||| |
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| T |
13167711 |
tcatcattaaaaccaatccgaatctttgaaactggacattgaatcttcccaccaacacgggtgcagatccatcagtccaccactcaccgtgacgaacctc |
13167810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 8777096 - 8777288
Alignment:
| Q |
38 |
ccgataatggtgtatgaatcgactgtaaacataaaga--ttcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtccaaa |
135 |
Q |
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|||| |||||| |||||||||||||| |||| | ||| |||||||||||| |||||||||||| |||||||| ||| ||| |||||||||||||||||| |
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| T |
8777096 |
ccgagaatggtctatgaatcgactgtcaacacagagagattcaagaaccaaaagcccctgcaacgaaagcatcagctataccgaccctttcgagtccaaa |
8777195 |
T |
|
| Q |
136 |
ccaagcaagaaatatcgtcattaaacccgatcccaacctttgaaactcgacatagaatccaaccgccaatacggttgcaaatccatcattcca |
228 |
Q |
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|||||||||||||||| ||| |||| | |||||||| ||||||||| ||||| ||||||| || |||| ||||||||| |||||||| |||| |
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| T |
8777196 |
ccaagcaagaaatatcttcagtaaaactgatcccaaactttgaaacatgacattgaatccaccctccaacacggttgcagatccatcagtcca |
8777288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 22310620 - 22310828
Alignment:
| Q |
36 |
acccgataatggtgtatgaatcgactgtaaacataaaga--ttcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtcca |
133 |
Q |
| |
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|||||| ||||||||||||||||||||| |||| | ||| |||||||||||| | |||||||||| |||||| | ||| ||||||| |||||||||||| |
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| T |
22310620 |
acccgagaatggtgtatgaatcgactgtcaacacagagagattcaagaaccaaaatcccctgcaacgaaagcagcagctatactgacgctttcgagtcca |
22310719 |
T |
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| Q |
134 |
aaccaagcaagaaatatcgtcattaaacccgatcccaacctttgaaactcgacatagaatccaaccgccaatacggttgcaaatccatcattccaccact |
233 |
Q |
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|||||||||||||||||| |||||||| | |||||||| |||||||||| ||||| ||||| ||||||| |||||| || || ||||| ||||||||| |
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| T |
22310720 |
aaccaagcaagaaatatcttcattaaaactgatcccaagctttgaaactggacattaaatccgcccgccaacacggtttcagattcatcagtccaccact |
22310819 |
T |
|
| Q |
234 |
taccacgac |
242 |
Q |
| |
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||| |||| |
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| T |
22310820 |
caccgcgac |
22310828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 1345559 - 1345775
Alignment:
| Q |
35 |
aacccgataatggtgtatgaatcgactgtaaacataaag--attcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtcc |
132 |
Q |
| |
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||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| |||| | | ||||||||| | | ||||| || |||||||| ||| |
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| T |
1345559 |
aacccgagaatggtgtatgaatcgactgtcaacacaaagtgattcaagaaccaaaagcctcgaccacaaaagcagcagttttaccgatcctttcgactcc |
1345658 |
T |
|
| Q |
133 |
aaaccaagcaagaaatatcgtcattaaacccgatcccaacctttgaaactcgacatagaatccaaccgccaatacggttgcaaatccatcattccaccac |
232 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| ||| | |||||| |||||||||||||||||| |||||||| |
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| T |
1345659 |
aaaccaagcaagaaatatcttcattaaaatcgatcccaagctttgaaactggacattgaaatcgctcgccaacacggttgcaaatccatcaatccaccac |
1345758 |
T |
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| Q |
233 |
ttaccacgacgaacctc |
249 |
Q |
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| ||| ||||||||||| |
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| T |
1345759 |
tcaccgcgacgaacctc |
1345775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 50544 - 50706
Alignment:
| Q |
70 |
aaagattcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatccc |
169 |
Q |
| |
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||||| ||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||| |
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| T |
50544 |
aaagaatcaagaacctatagcccctacaacaaaagcaacaactttactgaccctttcgagtccaaaccaagccaaaaatatcttcattaaaaccgatccc |
50643 |
T |
|
| Q |
170 |
aacctttgaaactcgacatagaatccaaccgccaatacggttgcaaatccatcattccaccac |
232 |
Q |
| |
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| | |||||||| ||||||||| | |||||||| ||||||||| |||||||| |||||||| |
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| T |
50644 |
tagcattgaaactgaacatagaattcgaccgccaacacggttgcagatccatcagtccaccac |
50706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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