View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19261_high_15 (Length: 235)

Name: NF19261_high_15
Description: NF19261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19261_high_15
NF19261_high_15
[»] chr5 (26 HSPs)
chr5 (1-231)||(30695314-30695545)
chr5 (7-175)||(32485947-32486115)
chr5 (1-231)||(40367517-40367736)
chr5 (7-175)||(19502335-19502504)
chr5 (1-231)||(40371655-40371871)
chr5 (7-175)||(26336767-26336936)
chr5 (1-165)||(43384973-43385138)
chr5 (61-175)||(36632383-36632497)
chr5 (28-161)||(20830304-20830437)
chr5 (7-133)||(12018759-12018888)
chr5 (7-133)||(12023317-12023446)
chr5 (1-133)||(7099374-7099510)
chr5 (1-133)||(7103943-7104079)
chr5 (1-133)||(16794129-16794265)
chr5 (1-133)||(16798690-16798826)
chr5 (1-133)||(10274567-10274698)
chr5 (1-88)||(10277225-10277312)
chr5 (28-102)||(20808675-20808749)
chr5 (7-231)||(37682064-37682277)
chr5 (71-231)||(37658814-37658973)
chr5 (7-133)||(37658760-37658878)
chr5 (182-231)||(16794310-16794360)
chr5 (182-231)||(16798871-16798921)
chr5 (182-231)||(7099280-7099329)
chr5 (182-231)||(7103849-7103898)
chr5 (104-136)||(5733082-5733114)
[»] chr3 (13 HSPs)
chr3 (7-231)||(21847138-21847362)
chr3 (7-231)||(21850228-21850452)
chr3 (1-175)||(9105296-9105470)
chr3 (1-175)||(11004365-11004539)
chr3 (7-175)||(43547751-43547920)
chr3 (7-175)||(9697614-9697783)
chr3 (1-133)||(54171924-54172060)
chr3 (1-133)||(54167344-54167480)
chr3 (56-176)||(43554645-43554765)
chr3 (1-133)||(39399127-39399258)
chr3 (41-161)||(755891-756012)
chr3 (28-133)||(38175790-38175894)
chr3 (50-83)||(755824-755857)
[»] chr7 (13 HSPs)
chr7 (1-231)||(27761418-27761649)
chr7 (1-231)||(27756867-27757098)
chr7 (1-231)||(47419483-47419714)
chr7 (7-231)||(22901182-22901407)
chr7 (1-161)||(35705655-35705815)
chr7 (26-169)||(733634-733777)
chr7 (7-175)||(7466485-7466641)
chr7 (1-133)||(7940083-7940219)
chr7 (1-133)||(7944636-7944772)
chr7 (28-152)||(13828087-13828211)
chr7 (179-231)||(7939989-7940041)
chr7 (179-231)||(7944542-7944594)
chr7 (9-88)||(37355589-37355669)
[»] chr8 (21 HSPs)
chr8 (1-231)||(30410235-30410465)
chr8 (1-231)||(28644583-28644813)
chr8 (32-231)||(30405726-30405925)
chr8 (1-175)||(33071939-33072113)
chr8 (1-175)||(42234656-42234830)
chr8 (1-175)||(38757024-38757186)
chr8 (1-133)||(43807485-43807619)
chr8 (1-133)||(43812044-43812178)
chr8 (7-133)||(197684-197813)
chr8 (7-133)||(202202-202331)
chr8 (7-133)||(312521-312650)
chr8 (7-133)||(317039-317168)
chr8 (3-80)||(41949825-41949902)
chr8 (1-76)||(41945360-41945434)
chr8 (104-158)||(27435169-27435223)
chr8 (183-231)||(197591-197639)
chr8 (183-231)||(202109-202157)
chr8 (183-231)||(312428-312476)
chr8 (183-231)||(316946-316994)
chr8 (201-231)||(43807391-43807421)
chr8 (201-231)||(43811950-43811980)
[»] chr1 (7 HSPs)
chr1 (1-220)||(39793852-39794070)
chr1 (1-231)||(16588383-16588614)
chr1 (1-231)||(26311543-26311760)
chr1 (1-231)||(26316034-26316251)
chr1 (1-175)||(43591783-43591957)
chr1 (1-133)||(10504457-10504588)
chr1 (104-136)||(41879945-41879977)
[»] chr6 (13 HSPs)
chr6 (1-231)||(27552014-27552246)
chr6 (1-220)||(8319960-8320178)
chr6 (1-220)||(8315421-8315640)
chr6 (1-221)||(17779936-17780156)
chr6 (1-175)||(17096236-17096410)
chr6 (1-231)||(27574643-27574863)
chr6 (7-169)||(17895691-17895853)
chr6 (7-175)||(14531749-14531917)
chr6 (7-169)||(17886816-17886972)
chr6 (18-133)||(6440865-6440979)
chr6 (41-82)||(17163689-17163730)
chr6 (45-83)||(7888212-7888250)
chr6 (41-82)||(17159659-17159700)
[»] chr4 (19 HSPs)
chr4 (7-231)||(31670118-31670341)
chr4 (1-175)||(53722028-53722202)
chr4 (1-175)||(10317025-10317199)
chr4 (7-175)||(8892582-8892750)
chr4 (7-175)||(27186170-27186341)
chr4 (61-175)||(50627904-50628018)
chr4 (1-175)||(43683636-43683799)
chr4 (7-133)||(3770870-3770999)
chr4 (1-231)||(44147044-44147273)
chr4 (1-231)||(44151579-44151808)
chr4 (76-175)||(35842843-35842942)
chr4 (1-133)||(41884946-41885076)
chr4 (1-133)||(31359172-31359303)
chr4 (1-133)||(49274517-49274647)
chr4 (14-174)||(53785880-53786039)
chr4 (31-83)||(45976222-45976274)
chr4 (1-75)||(31354699-31354772)
chr4 (7-57)||(35842797-35842847)
chr4 (183-231)||(3771044-3771093)
[»] chr2 (14 HSPs)
chr2 (1-231)||(8055413-8055643)
chr2 (1-231)||(8050860-8051090)
chr2 (1-229)||(6463345-6463562)
chr2 (7-175)||(12999426-12999594)
chr2 (1-133)||(36670524-36670660)
chr2 (1-133)||(36675072-36675208)
chr2 (7-142)||(13270980-13271103)
chr2 (1-133)||(35950443-35950574)
chr2 (2-133)||(41093846-41093976)
chr2 (45-133)||(34590280-34590366)
chr2 (1-80)||(29767961-29768041)
chr2 (178-231)||(36670701-36670755)
chr2 (178-231)||(36675249-36675303)
chr2 (34-71)||(27403696-27403733)
[»] scaffold0044 (2 HSPs)
scaffold0044 (7-231)||(44771-44994)
scaffold0044 (7-231)||(49351-49574)
[»] scaffold0440 (3 HSPs)
scaffold0440 (7-133)||(3008-3137)
scaffold0440 (7-133)||(7534-7662)
scaffold0440 (179-231)||(7704-7757)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30695314 - 30695545
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30695314 gtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtatataagatct 30695413  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  30695414 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgtatgtagaatcaataaagatcaa 30695513  T
Q  201 ttacaatttcatcataa-ctttcttctctctc 231  Q
    |||||||||||||||||  |||||||||||||    
T  30695514 ttacaatttcatcataatttttcttctctctc 30695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 32486115 - 32485947
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  32486115 tttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtt 32486016  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| || |||||    
T  32486015 tgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 40367736 - 40367517
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||            ||||||||||||||| |||||||||||||||    
T  40367736 gtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgttagaggctagtagataagatct 40367649  T
Q  101 agagtttgttacattgcttgtgcttcaagc-aacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtca 199  Q
    |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||  |||||||||| |||||   |||    
T  40367648 agagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttcatatgtagaatcaataagaatca 40367549  T
Q  200 attacaatttcatcataactttcttctctctc 231  Q
    |||||||||||||||||| |||||||||||||    
T  40367548 attacaatttcatcataattttcttctctctc 40367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 19502335 - 19502504
Alignment:
Q  7 tttagtgataatcacaatcaatggttaatt-acattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagt 105  Q
    |||||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  19502335 tttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagaaaataagatatagagt 19502434  T
Q  106 ttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19502435 ttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 40371871 - 40371655
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  40371871 gtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgttagaggctagtagataagatct 40371772  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||| |||||||| |||||              | |||||||||||||||||||||||||||||||||||||  |||||||||| |||||   ||||    
T  40371771 agagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcatatgtagaatcaataagaatcaa 40371686  T
Q  201 ttacaatttcatcataactttcttctctctc 231  Q
     |||||||||||||||| |||||||||||||    
T  40371685 ctacaatttcatcataattttcttctctctc 40371655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 26336936 - 26336767
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagt 105  Q
    |||||||||||||||||||  || ||||| |||||||||||| |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||||    
T  26336936 tttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttgttagaggttagcaaataagatctagagt 26336837  T
Q  106 ttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26336836 ttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 43384973 - 43385138
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||| ||| | |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |||| ||||    
T  43384973 gtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatct 43385072  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 165  Q
    || ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43385073 agggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 36632383 - 36632497
Alignment:
Q  61 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacc 160  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36632383 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 36632482  T
Q  161 tcctttgtacatttt 175  Q
    ||||||||| |||||    
T  36632483 tcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  28 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 127  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  128 agcaacttagctagatattgtatataagctacct 161  Q
    ||||||||| ||||| ||||||||||||||||||    
T  20830337 agcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 12018759 - 12018888
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  12018759 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 12018858  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  12018859 gtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 12023317 - 12023446
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  12023317 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 12023416  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  12023417 gtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7099510 - 7099374
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  7099510 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 7099411  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  7099410 tgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7104079 - 7103943
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  7104079 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 7103980  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  7103979 tgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 16794129 - 16794265
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  16794129 gtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 16794228  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  16794229 tgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 16798690 - 16798826
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  16798690 gtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 16798789  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  16798790 tgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 10274567 - 10274698
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | |    
T  10274567 gtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-t 10274665  T
Q  101 agagtttgttacattgcttgtgcttcaagcaac 133  Q
    || ||||||||  | |||||| |||||||||||    
T  10274666 agggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10277225 - 10277312
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 88  Q
    |||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||    
T  10277225 gtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  28 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctag 102  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 37682064 - 37682277
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc--taga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||           |||||||| | ||||| |   ||||    
T  37682064 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtta-----------gaggttagcaaataaggttgttaga 37682152  T
Q  104 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaatta 203  Q
    |||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||  | |||||||||| ||||||| ||| |||    
T  37682153 gtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcattta 37682248  T
Q  204 caattt-catcataactttcttctctctc 231  Q
    |||||| ||||||||||||||||||||||    
T  37682249 caattttcatcataactttcttctctctc 37682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 37658814 - 37658973
Alignment:
Q  71 aagtttgttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgt 168  Q
    |||||||||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   ||||    
T  37658814 aagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgt 37658910  T
Q  169 acatttttgtatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 231  Q
    |||||  | |||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  37658911 acattcat-tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 37658973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 37658760 - 37658878
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||| ||||||| ||||| |||||||| |||  |||||||||| ||||||||           |||||||||||||||||| | ||||| |   ||||    
T  37658760 tttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttgttagaggttagcaaataaggttgttaga 37658848  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  37658849 gtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 16794310 - 16794360
Alignment:
Q  182 tagaattaataaaggtcaattacaattt-catcataactttcttctctctc 231  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  16794310 tagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 16798871 - 16798921
Alignment:
Q  182 tagaattaataaaggtcaattacaattt-catcataactttcttctctctc 231  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  16798871 tagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 7099329 - 7099280
Alignment:
Q  182 tagaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    |||||| || |||| ||| |||||| ||||||||||||||||||||||||    
T  7099329 tagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7099280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 7103898 - 7103849
Alignment:
Q  182 tagaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    |||||| || |||| ||| |||||| ||||||||||||||||||||||||    
T  7103898 tagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7103849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  104 gtttgttacattgcttgtgcttcaagcaactta 136  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 21847138 - 21847362
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21847138 tttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 21847237  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||    
T  21847238 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatcatttacaa 21847337  T
Q  207 tttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||    
T  21847338 tttcatcataactttcttctctctc 21847362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 21850228 - 21850452
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21850228 tttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 21850327  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||    
T  21850328 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatcatttacaa 21850427  T
Q  207 tttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||    
T  21850428 tttcatcataactttcttctctctc 21850452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 9105296 - 9105470
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||  | |||||||||    
T  9105296 gtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgttagaggttaacaaataagatct 9105395  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  9105396 agagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 11004539 - 11004365
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| ||  |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  11004539 gtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgttagaggttagcaaataagatct 11004440  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  11004439 agagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 43547751 - 43547920
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagt 105  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  43547751 tttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttaacaaataagatctagagt 43547850  T
Q  106 ttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  43547851 ttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 9697614 - 9697783
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagt 105  Q
    |||||||||||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  9697614 tttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagt 9697713  T
Q  106 ttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  9697714 ttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 54172060 - 54171924
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  54172060 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 54171961  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  54171960 tgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 54167480 - 54167344
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataa--g 96  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||  | ||||  |    
T  54167480 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttaccaaataaggg 54167381  T
Q  97 atctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  54167380 tgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 43554645 - 43554765
Alignment:
Q  56 tatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataag 155  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||| || ||||||||||||||  ||| ||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  156 ctacctcctttgtacattttt 176  Q
    ||||||| |||||| ||||||    
T  43554745 ctacctcttttgtatattttt 43554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 39399258 - 39399127
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | |    
T  39399258 gtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-t 39399160  T
Q  101 agagtttgttacattgcttgtgcttcaagcaac 133  Q
    || ||||||||| | |||||| |||||||||||    
T  39399159 agggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 755891 - 756012
Alignment:
Q  41 tttgttttagtttgttatgaagtttgttacaagtttgttagag-gttagtagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttagc 138  Q
    |||||||||||||||| |||||||||||||||||||||||||| || | || |||| |   ||| ||||||||||||||||||||||||||| || || |    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaacta-ataaaaggttagggtttgttacattgcttgtgcttcaagctacctaac 755989  T
Q  139 tagatattgtatataagctacct 161  Q
    |||||  ||||||||||||||||    
T  755990 tagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 38175894 - 38175790
Alignment:
Q  28 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 127  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||   ||||||| ||| ||||||||| | |||||| |||||    
T  38175894 tggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttca 38175796  T
Q  128 agcaac 133  Q
    ||||||    
T  38175795 agcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  50 gtttgttatgaagtttgttacaagtttgttagag 83  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27761418 - 27761649
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27761418 gtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggtttgtagataagatct 27761517  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||     
T  27761518 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcat 27761617  T
Q  201 ttacaa-tttcatcataactttcttctctctc 231  Q
    |||||| |||||||||||||||||||||||||    
T  27761618 ttacaattttcatcataactttcttctctctc 27761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27756867 - 27757098
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27756867 gtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgttagaggtttgtagataagatct 27756966  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||     
T  27756967 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcat 27757066  T
Q  201 ttacaa-tttcatcataactttcttctctctc 231  Q
    |||||| |||||||||||||||||||||||||    
T  27757067 ttacaattttcatcataactttcttctctctc 27757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 47419714 - 47419483
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||    
T  47419714 gtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggttagcagataatatct 47419615  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||  ||||    
T  47419614 agagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtagaatcaataaaaatcaa 47419515  T
Q  201 ttacaatttcatcataacttt-cttctctctc 231  Q
    ||||||||||||||||| ||| ||||||||||    
T  47419514 ttacaatttcatcataattttacttctctctc 47419483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 22901182 - 22901407
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagt 105  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22901182 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagt 22901281  T
Q  106 ttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtca-attac 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||  ||||    
T  22901282 ttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttac 22901380  T
Q  205 aatttcatcataactttcttctctctc 231  Q
    || ||||||||||||||||||||||||    
T  22901381 aaattcatcataactttcttctctctc 22901407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 35705655 - 35705815
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgtt-atgaagtttgttacaagtttgttagaggttagtagataagatc 99  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||||    
T  35705655 gtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttgttagaggttagcaaataagatc 35705754  T
Q  100 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacct 161  Q
    ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  35705755 tagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacct 35705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 733777 - 733634
Alignment:
Q  26 aatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgctt 125  Q
    |||||||||| |||| ||   ||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  733777 aatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaaataagatctagagtttgttacattgcttgtgctt 733678  T
Q  126 caagcaacttagctagatattgtatataagctacctcctttgta 169  Q
    | ||||||||||||||| ||||||||||||||||||||||||||    
T  733677 cgagcaacttagctagacattgtatataagctacctcctttgta 733634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 7466641 - 7466485
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||            ||||||||||||||||||| | |||||||||||||||    
T  7466641 tttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgttagaggttagcaaataagatctagagtt 7466554  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7466553 tgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7940219 - 7940083
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  7940219 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 7940120  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  7940119 tgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7944772 - 7944636
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  7944772 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 7944673  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  7944672 tgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 13828211 - 13828087
Alignment:
Q  28 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 127  Q
    |||||||| |||||||  ||| ||||||| ||||||||||||||||||||||||||  ||    |||| |  ||| || |||||||||||||||||||||    
T  13828211 tggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttca 13828112  T
Q  128 agcaacttagctagatattgtatat 152  Q
    ||| || || ||||||| |||||||    
T  13828111 agctacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 7940041 - 7939989
Alignment:
Q  179 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  7940041 atgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7939989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 7944594 - 7944542
Alignment:
Q  179 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  7944594 atgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7944542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 37355589 - 37355669
Alignment:
Q  9 tagtgataatcacaatcaatggttaattacatt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 88  Q
    |||||||||||||| | | |||||||| | ||| ||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  37355589 tagtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattag 37355669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30410465 - 30410235
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30410465 gtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 30410366  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  30410365 agattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcaa 30410266  T
Q  201 ttacaatttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||||||||    
T  30410265 ttacaatttcatcataactttcttctctctc 30410235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 28644583 - 28644813
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28644583 gtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatct 28644682  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||| |||||   ||||    
T  28644683 agagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgcatgtagaatcaataagaatcaa 28644782  T
Q  201 ttacaatttcatcataactttcttctctctc 231  Q
    ||||||||||||||||| |||||||||||||    
T  28644783 ttacaatttcatcataattttcttctctctc 28644813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 30405925 - 30405726
Alignment:
Q  32 taattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagca 131  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  30405925 taatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagca 30405826  T
Q  132 acttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  30405825 acctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcaattacaatttcatcataactttcttctctctc 30405726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 33071939 - 33072113
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| || ||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  33071939 gtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatct 33072038  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  33072039 agagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 42234830 - 42234656
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  42234830 gtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatct 42234731  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  42234730 agagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 38757024 - 38757186
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||||||||||||||||||||||||    
T  38757024 gtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgttagaggttagtagataagatct 38757111  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38757112 agagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 43807619 - 43807485
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat-- 98  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |      
T  43807619 gtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttg 43807520  T
Q  99 ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
     ||||||||||||||||||||||||||||||||||    
T  43807519 ttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 43812178 - 43812044
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat-- 98  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |      
T  43812178 gtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttg 43812079  T
Q  99 ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
     ||||||||||||||||||||||||||||||||||    
T  43812078 ttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 197813 - 197684
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  197813 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 197714  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  197713 gtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 202331 - 202202
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  202331 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 202232  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  202231 gtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 312650 - 312521
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  312650 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 312551  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  312550 gtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 317168 - 317039
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  317168 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 317069  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  317068 gtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 41949825 - 41949902
Alignment:
Q  3 ttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtta 80  Q
    |||||||||||||||||||||||| || ||||| ||| | |||||||||||||| |||||||||||||||||| ||||    
T  41949825 ttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggtta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 41945360 - 41945434
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 76  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  ||||| |||||||||||    
T  41945360 gtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  104 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagcta 158  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 197639 - 197591
Alignment:
Q  183 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  197639 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 202157 - 202109
Alignment:
Q  183 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  202157 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 202109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 312476 - 312428
Alignment:
Q  183 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  312476 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 312428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 316994 - 316946
Alignment:
Q  183 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 231  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  316994 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 43807421 - 43807391
Alignment:
Q  201 ttacaatttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||||||||    
T  43807421 ttacaatttcatcataactttcttctctctc 43807391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 43811980 - 43811950
Alignment:
Q  201 ttacaatttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||||||||    
T  43811980 ttacaatttcatcataactttcttctctctc 43811950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39793852 - 39794070
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39793852 gtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 39793951  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||| ||||    
T  39793952 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcatatgtagaatcaataaagatcaa 39794050  T
Q  201 ttacaatttcatcataactt 220  Q
    ||||| ||||||||||||||    
T  39794051 ttacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 16588614 - 16588383
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  16588614 gtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttatcatataagatct 16588515  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    |||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||   ||||    
T  16588514 agagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgtatggagaatcaataagaatcaa 16588415  T
Q  201 ttacaatttcatcataac-tttcttctctctc 231  Q
    |||||||||||||||||| |||||||||||||    
T  16588414 ttacaatttcatcataacttttcttctctctc 16588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 26311543 - 26311760
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||||||||||||||||||||||||    
T  26311543 gtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgttagaggttagtagataagatct 26311630  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| ||||||| ||||    
T  26311631 agagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgtatgcagaatcaataaagatcaa 26311729  T
Q  201 ttacaatttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||||||||    
T  26311730 ttacaatttcatcataactttcttctctctc 26311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 26316034 - 26316251
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||||||||||||||||||||||||    
T  26316034 gtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgttagaggttagtagataagatct 26316121  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| ||||||| ||||    
T  26316122 agagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgtatgcagaatcaataaagatcaa 26316220  T
Q  201 ttacaatttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||||||||    
T  26316221 ttacaatttcatcataactttcttctctctc 26316251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 43591957 - 43591783
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| || |||||  || ||| ||||||||||||||||||||||||||||  |||||||||||||| | |||| ||||    
T  43591957 gtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgttagaggttagcaaataaaatct 43591858  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43591857 agagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 10504457 - 10504588
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||| | || ||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | |    
T  10504457 gtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-t 10504555  T
Q  101 agagtttgttacattgcttgtgcttcaagcaac 133  Q
    || ||||||||| | |||||| |||||||||||    
T  10504556 agggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  104 gtttgttacattgcttgtgcttcaagcaactta 136  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27552246 - 27552014
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||    
T  27552246 gtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgttaaacgttagcagataagatct 27552147  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-gtatgtagaattaataaaggtca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||   |||    
T  27552146 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcgtatggagaatcaataagaatca 27552047  T
Q  200 attacaatttcatcataac-tttcttctctctc 231  Q
    ||||||||||||||||||| |||||||||||||    
T  27552046 attacaatttcatcataacttttcttctctctc 27552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8320178 - 8319960
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8320178 gtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 8320079  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||||    
T  8320078 agagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct-tatgtagaatcaataaagatcaa 8319980  T
Q  201 ttacaatttcatcataactt 220  Q
    || || ||||||||||||||    
T  8319979 tttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8315640 - 8315421
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc 99  Q
    |||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315640 gtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc 8315541  T
Q  100 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||| |||    
T  8315540 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcatatgtagaatcaataaagatca 8315442  T
Q  200 attacaatttcatcataactt 220  Q
    ||| || ||||||||||||||    
T  8315441 atttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17779936 - 17780156
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    ||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |    
T  17779936 gtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgttagaggctagtagataagattt 17780035  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||   ||||    
T  17780036 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgtatgtagaatcaataagaatcaa 17780135  T
Q  201 ttacaatttcatcataacttt 221  Q
    |||||||||||||||||||||    
T  17780136 ttacaatttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 17096410 - 17096236
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17096410 gtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatct 17096311  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17096310 atagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27574863 - 27574643
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||           |||||||| |||||||||||    
T  27574863 gtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta-----------gaggttagcagataagatct 27574775  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-gtatgtagaattaataaaggtca 199  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| |||||   |||    
T  27574774 aaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttcgtatggaaaatcaataagaatca 27574675  T
Q  200 attacaatttcatcataactttcttctctctc 231  Q
    |||||||||||| ||||| |||  ||||||||    
T  27574674 attacaatttcaccataatttttctctctctc 27574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 17895853 - 17895691
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||||||||||| || ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||    
T  17895853 tttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgttagaggttagcaaataagatctagaatt 17895754  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 169  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17895753 tgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgta 17895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 14531917 - 14531749
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||||||||||||    
T  14531917 tttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgttagaggttagcaaataagatctagagtt 14531818  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  14531817 tgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 17886972 - 17886816
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||       |||||||||||||||||| | |||||||||||||||    
T  17886972 tttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttgttagaggttagcaaataagatctagagtt 17886879  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 169  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17886878 tgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgta 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  18 tcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgc 117  Q
    ||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  118 ttgtgcttcaagcaac 133  Q
    |||| |||||||||||    
T  6440880 ttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  41 tttgttttagtttgttatgaagtttgttacaagtttgttaga 82  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  45 ttttagtttgttatgaagtttgttacaagtttgttagag 83  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 17159659 - 17159700
Alignment:
Q  41 tttgttttagtttgttatgaagtttgttacaagtttgttaga 82  Q
    |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159659 tttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 31670118 - 31670341
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31670118 tttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 31670217  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaa 206  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||| ||||||| ||| ||||||    
T  31670218 tgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgaatgtagaatcaataaagatcatttacaa 31670316  T
Q  207 tttcatcataactttcttctctctc 231  Q
    |||||||||||||||||||||||||    
T  31670317 tttcatcataactttcttctctctc 31670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 53722028 - 53722202
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  53722028 gtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggctagcagataagatct 53722127  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53722128 agagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10317199 - 10317025
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||| ||||||||||||| || ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  10317199 gtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatct 10317100  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10317099 agagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 8892750 - 8892582
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||| |||||||    
T  8892750 tttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttgttagagattagcaaataagatatagagtt 8892651  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8892650 tgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 27186170 - 27186341
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgtttt--agttt-gttatgaagtttgttacaagtttgttagaggttagtagataagatctaga 103  Q
    |||||||||||||||||| | || ||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  27186170 tttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctaga 27186269  T
Q  104 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  27186270 gtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 50628018 - 50627904
Alignment:
Q  61 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacc 160  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  50628018 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacc 50627919  T
Q  161 tcctttgtacatttt 175  Q
    |||||| || |||||    
T  50627918 tcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 43683799 - 43683636
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    ||||| |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||           |||||||| | ||||||| |    
T  43683799 gtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta-----------gaggttagcaaataagatat 43683711  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||    
T  43683710 agagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatatttt 43683636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 3770870 - 3770999
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  3770870 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 3770969  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  3770970 gtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 44147044 - 44147273
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  44147044 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 44147143  T
Q  99 c--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaagg 196  Q
       |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||  |  | ||||||| |||||||     
T  44147144 tgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattcat--aagtagaatcaataaaga 44147238  T
Q  197 tcaattacaatttcatcataactttcttctctctc 231  Q
    ||| |||||||||||||||||||||||||||||||    
T  44147239 tcatttacaatttcatcataactttcttctctctc 44147273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 44151579 - 44151808
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  44151579 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 44151678  T
Q  99 c--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaagg 196  Q
       |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||  |  | ||||||| |||||||     
T  44151679 tgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattcat--aagtagaatcaataaaga 44151773  T
Q  197 tcaattacaatttcatcataactttcttctctctc 231  Q
    ||| |||||||||||||||||||||||||||||||    
T  44151774 tcatttacaatttcatcataactttcttctctctc 44151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  76 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41884946 - 41885076
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||||| |    
T  41884946 gtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagttagagattagctcataagat-t 41885043  T
Q  101 agagtttgttacattgcttgtgcttcaagcaac 133  Q
    || ||||||||| | |||||| |||||||||||    
T  41885044 agggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 31359172 - 31359303
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||| ||||||||||||| | |||||||| |||||| | || |||||| |||||| ||||||||||||| ||||||| ||||   ||||| | |    
T  31359172 gtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagttagagattagctcataaggt-t 31359270  T
Q  101 agagtttgttacattgcttgtgcttcaagcaac 133  Q
    || ||||||||| | |||||| |||||||||||    
T  31359271 agggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 49274647 - 49274517
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    ||||||||||||||| |||| ||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | |    
T  49274647 gtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagttagagattagctcataaggt-t 49274550  T
Q  101 agagtttgttacattgcttgtgcttcaagcaac 133  Q
    || ||||||||| | |||||| |||||||||||    
T  49274549 agggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 53785880 - 53786039
Alignment:
Q  14 ataatcacaatcaatggttaattacattt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgtta 111  Q
    ||||||||| ||| |||||||| ||||||  |||||| |||||||| ||| ||||||||||||||||||||   |||   |||   | ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgtta 53785977  T
Q  112 cattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 174  Q
    ||| |||||||||||||||||| || |||| | | ||||||||||||||| ||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacct-ctttgtacattt 53786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 45976274 - 45976222
Alignment:
Q  31 ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagag 83  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976274 ttaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31354699 - 31354772
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtt 75  Q
    |||||||||||||||||| ||||| | |||||||| |||||| | || || |||||||||| |||||||||||||    
T  31354699 gtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgtta 57  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 3771044 - 3771093
Alignment:
Q  183 agaattaataaaggtcaattacaattt-catcataactttcttctctctc 231  Q
    ||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  3771044 agaatcaataaagatcatttacaattttcatcataactttcttctctctc 3771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8055413 - 8055643
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8055413 gtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgttagaggttagtagataagatct 8055512  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||| ||      
T  8055513 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcatatgtagaatcaataaagatctt 8055611  T
Q  201 ttacaa-tttcatcataactttcttctctctc 231  Q
    |||||| |||||||||||||||||||||||||    
T  8055612 ttacaattttcatcataactttcttctctctc 8055643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8050860 - 8051090
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8050860 gtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 8050959  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  |||||||||| ||||||| ||      
T  8050960 agagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtaca-tttcatatgtagaatcaataaagatctt 8051058  T
Q  201 ttacaa-tttcatcataactttcttctctctc 231  Q
    |||||| |||||||||||||||||||||||||    
T  8051059 ttacaattttcatcataactttcttctctctc 8051090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6463562 - 6463345
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||            |||||||||||||||||||||||||||||||    
T  6463562 gtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgttagaggttagtagataagatct 6463475  T
Q  101 agagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaa 200  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  6463474 agagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagtatgtagaatcaataaagatcaa 6463375  T
Q  201 ttacaatttcatcataac-tttcttctctc 229  Q
    |||||||||||||||||| |||||||||||    
T  6463374 ttacaatttcatcataacttttcttctctc 6463345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 12999594 - 12999426
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12999594 tttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 12999495  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 175  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12999494 tgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 36670524 - 36670660
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  36670524 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 36670623  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  36670624 tgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 36675072 - 36675208
Alignment:
Q  1 gtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat 98  Q
    ||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  36675072 gtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggt 36675171  T
Q  99 --ctagagtttgttacattgcttgtgcttcaagcaac 133  Q
       ||||||||||||||||||||||||||||||||||    
T  36675172 tgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 13271103 - 13270980
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 106  Q
    |||||||||||||||||||| || ||||||||| ||| ||||||||||||||            |||||||||||||||||||| |||||||||| ||||    
T  13271103 tttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgttagaggttagtaaataagatctaaagtt 13271016  T
Q  107 tgttacattgcttgtgcttcaagcaacttagctaga 142  Q
    |||||||||| || ||||||||||||||||||||||    
T  13271015 tgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 35950574 - 35950443
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatct 100  Q
    |||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||    |||| | |    
T  35950574 gtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagttagagattagctcgtaaggt-t 35950476  T
Q  101 agagtttgttacattgcttgtgcttcaagcaac 133  Q
    || ||||||||| | |||||| |||||||||||    
T  35950475 agggtttgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 41093846 - 41093976
Alignment:
Q  2 tttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatcta 101  Q
    ||||||||||||||||||||||| | || ||||| | |||| | || ||||||||||||| |||||||||| || ||||||| ||||   ||||| | ||    
T  41093846 tttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagttagagattagctcataaggt-ta 41093944  T
Q  102 gagtttgttacattgcttgtgcttcaagcaac 133  Q
    | ||||||||| | |||||| |||||||||||    
T  41093945 gggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  45 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 29767961 - 29768041
Alignment:
Q  1 gtttagtttagtgataatcacaatcaatgg-ttaattacattttgttttagtttgttatgaagtttgttacaagtttgtta 80  Q
    ||||||||||||||||||||  || ||| | || || ||| |||||||||||||||| | |||||||||||||||| ||||    
T  29767961 gtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 36670701 - 36670755
Alignment:
Q  178 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 231  Q
    ||| |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  36670701 tatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36670755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 36675249 - 36675303
Alignment:
Q  178 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 231  Q
    ||| |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  36675249 tatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36675303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 27403733 - 27403696
Alignment:
Q  34 attacattttgttttagtttgttatgaagtttgttaca 71  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27403733 attacactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 44994 - 44771
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  44994 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 44895  T
Q  104 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaatta 203  Q
    |||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||  | |||||||||| ||||||| ||| |||    
T  44894 gtttgttacattgcttgtgcttcaagcaacgt--ttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcattta 44799  T
Q  204 caatttcatcataactttcttctctctc 231  Q
    ||| ||||||||||||||||||||||||    
T  44798 caaattcatcataactttcttctctctc 44771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 49574 - 49351
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  49574 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 49475  T
Q  104 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaatta 203  Q
    |||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||  | |||||||||| ||||||| ||| |||    
T  49474 gtttgttacattgcttgtgcttcaagcaacgt--ttaga-cttgtatataagaccattatcttgtacattcat-tatgtagaatcaataaagatcattta 49379  T
Q  204 caatttcatcataactttcttctctctc 231  Q
    ||| ||||||||||||||||||||||||    
T  49378 caaattcatcataactttcttctctctc 49351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 3008 - 3137
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctaga 103  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||    
T  3008 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttaga 3107  T
Q  104 gtttgttacattgcttgtgcttcaagcaac 133  Q
    ||||||||||||||||||||||||||||||    
T  3108 gtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 7534 - 7662
Alignment:
Q  7 tttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagat--ctagag 104  Q
    |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   |||||    
T  7534 tttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 7633  T
Q  105 tttgttacattgcttgtgcttcaagcaac 133  Q
    |||||||||||||||||| ||||||||||    
T  7634 tttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 7704 - 7757
Alignment:
Q  179 atgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 231  Q
    ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  7704 atgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 7757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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