View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19261_low_1 (Length: 867)
Name: NF19261_low_1
Description: NF19261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19261_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 23 - 859
Target Start/End: Complemental strand, 4092416 - 4091589
Alignment:
| Q |
23 |
acataacataacaatgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatcttagtgactttaatgggaggattagtgggttat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092416 |
acataacataacaatgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatcttagtgactttaatgggaggattagtgggttat |
4092317 |
T |
|
| Q |
123 |
ctctattggccattttggaagttatggaaagttccaggcccaccatctctgcctcttgtaggacaccttccattgctagcaaagtatggtcctgacgttt |
222 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092316 |
ctctattggccattttggaagttaaggaaagttccaggcccaccatctctgcctcttgtaggacaccttccattgctagcaaagtatggtcctgacgttt |
4092217 |
T |
|
| Q |
223 |
tctcagtccttgctaagcaatatggccctatctacaggtttctatattctacttgcatacatatatacaatttatcactttatttatctttcttcctctt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4092216 |
tctcagtccttgctaagcaatatggccctatctacaggtttctatattctacttgcatac----atacaatttatcactttatttatctttcttcctctt |
4092121 |
T |
|
| Q |
323 |
tttcttttagttctctggttgagaaggatnnnnnnngaagctgttattgttggaatcaagatcaagttgaatacatgtcatgatatgcaaaatcttcaaa |
422 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092120 |
tttcttttagttctctggttgagaaggataaaaaaagaagctgttattgttggaatcaagatcaagttgaatacatgtcatgatatgcaaaatcttcaaa |
4092021 |
T |
|
| Q |
423 |
ccctttttgatgaggatgaacttcagcctagtcatgatggctacgaaccctagcctagtggataatgcttggggnnnnnnnntactacttgtgtatttgg |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4092020 |
ccctttttgatgaggatgaacttcagcctagtcatgatggctacgaaccctagcctagtggataatgcttgggg-aaaaaaatactacttgtgtatttgg |
4091922 |
T |
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| Q |
523 |
atgctagcatttgttattacatgcaagtttgagactagggttaatattttatttaggatattttctaaattaaaacaaatattaatctttannnnnnnna |
622 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4091921 |
atgctagcatttgttattacatgcaagtttgagactagggttaatattttatttaggatattttctaaattaaaacaaatattaatctttatttttttta |
4091822 |
T |
|
| Q |
623 |
ataataattaatgagattagcaaaatcaattttaaaagaaaattttgatgtaagtcaaatattaaaataattattactgttgatgatattgttcatattt |
722 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091821 |
ataa----taatgagattagcaaaatcaattttaaaagaaaattttgatgcaagtcaaatattaaaataattattactgttgatgatattgttcatattt |
4091726 |
T |
|
| Q |
723 |
gttaaatggagcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattc |
822 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
4091725 |
gttaaatggagcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaattaaaaaattcaaagaaattc |
4091626 |
T |
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| Q |
823 |
caaacagaagcattccttctcctatctctgctcctcc |
859 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
4091625 |
caaacagaagcattccttctcctatctctgcttctcc |
4091589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 733 - 847
Target Start/End: Original strand, 48182321 - 48182435
Alignment:
| Q |
733 |
gcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaag |
832 |
Q |
| |
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|||||||||||||||||||||| || || ||||| ||||||||||||| || |||||||| || ||||| || |||||||||||||||||||| |
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| T |
48182321 |
gcagatttcatatgggaagacagccactaataatagtagcagatgcagaactgtgtaaagaggttggaatcaaaaaatttaaagacattccaaacagaag |
48182420 |
T |
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| Q |
833 |
cattccttctcctat |
847 |
Q |
| |
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|| ||| |||||||| |
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| T |
48182421 |
cactccctctcctat |
48182435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 48175545 - 48175660
Alignment:
| Q |
148 |
ggaaagttccaggcccaccatctctgcctcttgtaggacaccttccattgctagcaaagtatggtcctgacgttttctcagtccttgctaagcaatatgg |
247 |
Q |
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|||| ||||| || |||||||||||||| | ||||| ||||||| ||||| || || |||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
48175545 |
ggaaggttcctggtccaccatctctgccgttggtagggcaccttcacttgctggctaaacatggccctgatgttttctcagtccttgccaagcaatatgg |
48175644 |
T |
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| Q |
248 |
ccctatctacaggttt |
263 |
Q |
| |
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|| || ||||||||| |
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| T |
48175645 |
tccaatttacaggttt |
48175660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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