View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19261_low_10 (Length: 253)
Name: NF19261_low_10
Description: NF19261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19261_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 7499702 - 7499834
Alignment:
| Q |
108 |
ttcatgatcaagaaacataaaaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaacaattagatcagacttcagagc |
207 |
Q |
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| T |
7499702 |
ttcatgatctagaaacataaaaaactgagacatcattctaaaaccagccatgtattaacagatagtgc-atatataaacaattagatcagacttcagagc |
7499800 |
T |
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| Q |
208 |
cacagaaacttaagaactgttattgaagaataat |
241 |
Q |
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| T |
7499801 |
cacagaaactttagaactgttattgaagaataat |
7499834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 7488311 - 7488416
Alignment:
| Q |
4 |
tgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacatagggtattgttttataaagaatcatgagactatggctatcaga |
103 |
Q |
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| T |
7488311 |
tgttggaaaagagggatttgatgtgtattacggtgtgacatgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggactatcaga |
7488410 |
T |
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| Q |
104 |
catgtt |
109 |
Q |
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|||||| |
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| T |
7488411 |
catgtt |
7488416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 6943733 - 6943675
Alignment:
| Q |
3 |
ttgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacata |
61 |
Q |
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| T |
6943733 |
ttgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacata |
6943675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 8139134 - 8139028
Alignment:
| Q |
128 |
aaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatat-aaacaattagatcagacttcagagccacagaaacttaagaactg |
226 |
Q |
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| T |
8139134 |
aaaactgagacataattccaaagtcagccatgtattaactgatagtg-catacataaaacaattaga-------tgagagccacagaaactttagaactg |
8139043 |
T |
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| Q |
227 |
ttattgaagaataat |
241 |
Q |
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||| |||||||||| |
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| T |
8139042 |
ttacggaagaataat |
8139028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 8139198 - 8139168
Alignment:
| Q |
111 |
atgatcaagaaacataaaaaactgagacatc |
141 |
Q |
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| T |
8139198 |
atgatcaagaaacataaaaaactgagacatc |
8139168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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