View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19261_low_14 (Length: 237)
Name: NF19261_low_14
Description: NF19261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19261_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 7495588 - 7495430
Alignment:
| Q |
63 |
aacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaacgaaacattatatttccttcgcagaagtttataatctaagtactaaat |
162 |
Q |
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| T |
7495588 |
aacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaatgaaacattatatttccttcgcggaagtttataatctaagtactaaat |
7495489 |
T |
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| Q |
163 |
tatgtacccctactcaacatcctcatcctttaactatcatcatgcgtcaacgtccttct |
221 |
Q |
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| T |
7495488 |
tatggacccctactcaacatcctcatcctttaactatcatcacgcgtcaacgtccttct |
7495430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7488166 - 7488081
Alignment:
| Q |
1 |
ctccgagtctctgccttgacaacgactcacgcatgtatggtttcggtgctgatgatccaaacaacatcaacttcaaagctgtgaaa |
86 |
Q |
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| T |
7488166 |
ctccgagtctctgccttgataacgactcatgcatgtatggtttcggtgccgatgatcccaacaacatcaacttcaaagttgtgaaa |
7488081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 7475264 - 7475099
Alignment:
| Q |
33 |
atgtatggtttcggtgctgatgatccaaacaacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaacgaaacattatatttcct |
132 |
Q |
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| T |
7475264 |
atgtatggttttggtgcagatgatccaaacatcattgatttcaaagttgtgaaactccatgtcaagtattac-----gagaa-gaaacattatatttcat |
7475171 |
T |
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| Q |
133 |
tcgcagaagtttataatctaagtactaaattatgtacccctactcaacatcctcatcctttaactatcatca |
204 |
Q |
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| T |
7475170 |
gggcggaagtttatagtctaggtactaaatcatggactcctaccctacatgctcctccttttactatcatca |
7475099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 6943898 - 6943950
Alignment:
| Q |
34 |
tgtatggtttcggtgctgatgatccaaacaacatcaacttcaaagctgtgaaa |
86 |
Q |
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| T |
6943898 |
tgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaa |
6943950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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