View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19261_low_3 (Length: 609)

Name: NF19261_low_3
Description: NF19261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19261_low_3
NF19261_low_3
[»] chr5 (15 HSPs)
chr5 (1-585)||(1757589-1758176)
chr5 (1-256)||(29568441-29568707)
chr5 (1-256)||(29569772-29570015)
chr5 (1-140)||(29168141-29168283)
chr5 (1-96)||(27918583-27918678)
chr5 (1-90)||(29425232-29425324)
chr5 (354-445)||(29166703-29166794)
chr5 (148-265)||(27918459-27918573)
chr5 (134-292)||(29166788-29166929)
chr5 (137-191)||(29425182-29425236)
chr5 (226-294)||(29425109-29425176)
chr5 (477-519)||(29568917-29568959)
chr5 (348-389)||(29570123-29570164)
chr5 (354-391)||(29568831-29568868)
chr5 (542-585)||(29568991-29569034)
[»] chr4 (10 HSPs)
chr4 (1-358)||(27481807-27482167)
chr4 (1-344)||(27461673-27462028)
chr4 (1-255)||(18985872-18986128)
chr4 (1-203)||(27521407-27521609)
chr4 (477-585)||(27481561-27481672)
chr4 (226-288)||(27521609-27521671)
chr4 (285-343)||(27521694-27521752)
chr4 (491-585)||(27461538-27461635)
chr4 (480-577)||(27521759-27521859)
chr4 (393-459)||(27481742-27481808)
[»] chr3 (2 HSPs)
chr3 (1-167)||(25518343-25518512)
chr3 (212-292)||(25518264-25518344)


Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 1758176 - 1757589
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1758176 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagca 1758077  T
Q  101 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1758076 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaactgttttct 1757977  T
Q  201 ttt--gtttttagatttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatataggag 298  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757976 tttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatataggag 1757877  T
Q  299 atggtatatgatgatttgttgagattttcaagggtaactgatttttgtatgtaggatatataagctcaaccacataatcacatcaatctctatgtagagt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757876 atggtatatgatgatttgttgagattttcaagggtaactgatttttgtatgtaggatatataagctcaaccacataatcacatcaatctctatgtagagt 1757777  T
Q  399 taaagacttcgaacgtcgaggatcgaacccacgataactaattctcaccgtaccaatctctctctatatatatatgcatcctcaaaatccaatcaaaatg 498  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757776 taaagacttcggacgtcgaggatcgaacccacgataactaattctcaccgtaccaatctctctctatatatatatgcatcctcaaaatccaatcaaaatg 1757677  T
Q  499 tttaaaagaaaagaagttttagataa-nnnnnnngagagatacaaaccaaaatggattctggctggtcatgacattttttgccccttc 585  Q
    |||| |||||||||||||||| ||||        |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1757676 tttagaagaaaagaagttttacataatttgttttgagagatacaaatcaaaatggattctggctggtcatgacattttttgccccttc 1757589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 29568441 - 29568707
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgat--------- 91  Q
    |||||||| |||||||||||||||  |||| ||||||||||||| |||||||||||||||  |||||||| |||||||||||||| |||||             
T  29568441 cttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgatgat 29568540  T
Q  92 gatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||    
T  29568541 gatgaagcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactcatttttctgaa 29568640  T
Q  192 ctcttttc--ttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaag 256  Q
     |  ||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  29568641 ttgctttcttttttgtttttggatttgaatttgaattttggttgtaaagtaagtgtgagtggcaaag 29568707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 29569772 - 29570015
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagca 100  Q
    ||||||||  ||||||||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||             
T  29569772 cttgcgtcggaagaatgcttcttggatgatagttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgat--------- 29569862  T
Q  101 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttc- 199  Q
         |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| | ||| | |||||||  | | |||||     
T  29569863 -----gatgttggaataatcatggattgtttgtgtttgtgagggatcaaaatggattcttgttgaatctgtagaccactcgttcttctagattgttttct 29569957  T
Q  200 -ttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaag 256  Q
     |||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  29569958 tttttgtttttggatttgaatttgaactttggtagtaaagttagtgtgagtggcaaag 29570015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 29168283 - 29168141
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagag---tgatgatgaa 97  Q
    |||||||  ||||||||||| |||  |||| ||||||||||||| ||||||||||||||||  |||||||||||||| ||||||| |   ||||||||||    
T  29168283 cttgcgttgaaagaatgcttattggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaa 29168184  T
Q  98 gcattgatgatgttggaataatcatggattgtttctgtttgtg 140  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  29168183 gcattgatgatgttggaataatcatgctttgtttctgtttgtg 29168141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 27918678 - 27918583
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatga 96  Q
    |||||| || ||||||||||||||  |||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  27918678 cttgcgccagaagaatgcttcttggatgatagttggtgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga 27918583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29425324 - 29425232
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgat---ggtgaacagcgtttgacagagtttttgtgagagtga 90  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||   ||||||| ||||||||||||||| ||||||| ||||    
T  29425324 cttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga 29425232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 29166794 - 29166703
Alignment:
Q  354 atatataagctcaaccacataatcacatcaatctctatgtagagttaaagacttcgaacgtcgaggatcgaacccacgataactaattctca 445  Q
    ||||||| |||||||||||||||| ||||||||||||| || ||||| |||||||   |||||||||||||||||||||||||||| |||||    
T  29166794 atatataggctcaaccacataatcccatcaatctctatataaagttagagacttcaggcgtcgaggatcgaacccacgataactaactctca 29166703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 27918573 - 27918459
Alignment:
Q  148 aacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttcttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtga 247  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||| | ||| || ||  |||| ||||||||||||||||||||||| ||||||||| |||    
T  27918573 aacatggattcttgttgaatctgtagatcactcattctgctgaattgttt-ctgtt--ttttggatttgaatttgaactttggttgcaaagtaagtctga 27918477  T
Q  248 gtcgcaaagagttatgaa 265  Q
    || |||||||||||||||    
T  27918476 gtggcaaagagttatgaa 27918459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 134 - 292
Target Start/End: Complemental strand, 29166929 - 29166788
Alignment:
Q  134 gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttcttttgtttttagatttgaatttgaactttggttg 233  Q
    ||||||||||||||| || |||||||||||||||||||| ||||| ||||||||| || | ||||||||| | ||                 ||||||||    
T  29166929 gtttgtgagggatcatcatggattcttgttgaatctgtagatcactcattcttctcaattgttttcttttttgtt-----------------tttggttg 29166847  T
Q  234 taaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatata 292  Q
    |||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||    
T  29166846 taaagtaagtgtgagtggcaaagagttatgaaaaaagagggaaggttggagtatatata 29166788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 29425236 - 29425182
Alignment:
Q  137 tgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaa 191  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29425236 tgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaa 29425182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 29425176 - 29425109
Alignment:
Q  226 tttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatata 294  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  29425176 tttggttgtaaagtaagtgtgagtggcaaagagttatgaa-aaagagggaaggtttgattatatatata 29425109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 519
Target Start/End: Original strand, 29568917 - 29568959
Alignment:
Q  477 tcctcaaaatccaatcaaaatgtttaaaagaaaagaagtttta 519  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  29568917 tcctcaaaatccaatcaaaatgtttaaaagaaaagaaatttta 29568959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 29570123 - 29570164
Alignment:
Q  348 tgtaggatatataagctcaaccacataatcacatcaatctct 389  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  29570123 tgtaggatatataagctcaaccatataatcacatcaatctct 29570164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 29568831 - 29568868
Alignment:
Q  354 atatataagctcaaccacataatcacatcaatctctat 391  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29568831 atatataagctcaaccaaataatcacatcaatctctat 29568868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 585
Target Start/End: Original strand, 29568991 - 29569034
Alignment:
Q  542 aaccaaaatggattctggctggtcatgacattttttgccccttc 585  Q
    ||||||||||||||||||||||||||||   |||||||||||||    
T  29568991 aaccaaaatggattctggctggtcatgaatctttttgccccttc 29569034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 27482167 - 27481807
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagca 100  Q
    ||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| |||    
T  27482167 cttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggca 27482068  T
Q  101 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttt--t 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||  |    
T  27482067 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaattgttttgt 27481968  T
Q  199 cttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatatag--g 296  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||  |    
T  27481967 tttttgtttttagatttgaatttgagctttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagaggtatggtttgagtatatatataggag 27481868  T
Q  297 agatggtatatgatgatttgttgagattttcaagggtaactgatttttgtatgtaggatata 358  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||    
T  27481867 agatggtatatgatgatttg-tgaggttttcaagggtaactgatttttgtaggtaggatata 27481807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 27462028 - 27461673
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagca 100  Q
    ||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||    
T  27462028 cttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagca 27461929  T
Q  101 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttt--t 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||  |    
T  27461928 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaattgttttct 27461829  T
Q  199 cttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgag----------tata 288  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||          ||||    
T  27461828 cttttgtttttagatttgaatttgaactttgattgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtgtatatatatata 27461729  T
Q  289 tatataggagatggtatatgatgatttgttgagattttcaagggtaactgattttt 344  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  27461728 tatataggagatggtatatgatgatctgttgaggttttcaagggtaattgattttt 27461673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 18986128 - 18985872
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagca 100  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||    
T  18986128 cttgcgtcaaaagaatgcttcttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagca 18986029  T
Q  101 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttc- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| | |||||     
T  18986028 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaccatggattcttgttgaatttgtaaatcacccattcttctgaattgttttct 18985929  T
Q  200 -ttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaa 255  Q
     |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  18985928 tttttctttttagatttgaatttgaactttggtcgtaaagtaagtgtgagtggcaaa 18985872  T

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Target: chr4; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27521407 - 27521609
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagca 100  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  27521407 cttgcgtcaaaagaatgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagca 27521506  T
Q  101 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  27521507 ttgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaattgttttct 27521606  T
Q  201 ttt 203  Q
    |||    
T  27521607 ttt 27521609  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 477 - 585
Target Start/End: Complemental strand, 27481672 - 27481561
Alignment:
Q  477 tcctcaaaatccaatcaaaatgtttaaaagaaaagaagttttagataannnnnnn--gagagatacaaaccaaaatggatt-ctggctggtcatgacatt 573  Q
    |||| |||||| |||||||||||||||| |||||||||||||| ||||         |||||||||||||||||||||||| |||||||||||||||| |    
T  27481672 tccttaaaatctaatcaaaatgtttaaaggaaaagaagttttacataatttgtatttgagagatacaaaccaaaatggatttctggctggtcatgacaat 27481573  T
Q  574 ttttgccccttc 585  Q
    ||||||||||||    
T  27481572 ttttgccccttc 27481561  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 27521609 - 27521671
Alignment:
Q  226 tttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtata 288  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  27521609 tttgattgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtata 27521671  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 27521694 - 27521752
Alignment:
Q  285 tatatatataggagatggtatatgatgatttgttgagattttcaagggtaactgatttt 343  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  27521694 tatatatataggagatggtatatgatgatctgttgaggttttcaagggtaactgatttt 27521752  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 491 - 585
Target Start/End: Complemental strand, 27461635 - 27461538
Alignment:
Q  491 tcaaaatgtttaaaagaaaagaagttttagataannnnnnn--gagagatacaaaccaaaatggatt-ctggctggtcatgacattttttgccccttc 585  Q
    ||||||||||||||||||||||||||||| ||||         |||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  27461635 tcaaaatgtttaaaagaaaagaagttttacataatttgtatttgagagatacaaaccaaaatggatttctagctggtcatgacattttttgccccttc 27461538  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 480 - 577
Target Start/End: Original strand, 27521759 - 27521859
Alignment:
Q  480 tcaaaatccaatcaaaatgtttaaaagaaaagaagttttagataannnnnnn--gagagatacaaaccaaaatgga-ttctggctggtcatgacattttt 576  Q
    |||||||| |||||||||||||||||||||| |||||||| ||||         |||||||||||||||||||||| |||||||||||||||||||||||    
T  27521759 tcaaaatcaaatcaaaatgtttaaaagaaaataagttttacataatttgtatttgagagatacaaaccaaaatggatttctggctggtcatgacattttt 27521858  T
Q  577 t 577  Q
    |    
T  27521859 t 27521859  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 27481808 - 27481742
Alignment:
Q  393 tagagttaaagacttcgaacgtcgaggatcgaacccacgataactaattctcaccgtaccaatctct 459  Q
    |||||||| ||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||||    
T  27481808 tagagttagagacttcgagcgccgaggatcgaacccatgataactaattctcactgtaccaatctct 27481742  T

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Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 25518512 - 25518343
Alignment:
Q  1 cttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatga---a 97  Q
    |||||||| |||||||||||||||  |||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||||   |    
T  25518512 cttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaa 25518413  T
Q  98 gcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacaaggattcttgttgaat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25518412 gcattgatgatgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat 25518343  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 25518344 - 25518264
Alignment:
Q  212 atttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatata 292  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||||    
T  25518344 atttgaatttgaatttttgttgtaaagtaagtgtgagtggcaaagagttgtgaaaaaagagggaaggtttgagtatatata 25518264  T

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