View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19261_low_5 (Length: 403)
Name: NF19261_low_5
Description: NF19261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19261_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 12370155 - 12370020
Alignment:
| Q |
13 |
aatatccaaaattgtccgaatccaaatgcaagttgtacagccaaatcctgtcaaacgtgtttgcttgcttcctctccaattcaagcagggttatcacann |
112 |
Q |
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| T |
12370155 |
aatatccaaaattgtcccaatccaaatgcaagctgtacagccaaatcctgtcaaacgtgtttgcttgcttcctccccaattcaagcagtgttatcacatt |
12370056 |
T |
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| Q |
113 |
nnnnnctctacttttaacaaaccctagccctactcc |
148 |
Q |
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| T |
12370055 |
tttttctccacttttaacaaaccctaaccctactcc |
12370020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 3336257 - 3336123
Alignment:
| Q |
13 |
aatatccaaaattgtccgaatccaaatgcaagttgtacagccaaatcctgtcaaacgtgtttgcttgcttcctctccaattcaagcagggttatcacann |
112 |
Q |
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| T |
3336257 |
aatattcaaaattgtcccaatccaaatgcaagctgcacagccaaatcctgtcaaacacgtttgcttgcttcctccccaattcaagcagtgttatcaca-t |
3336159 |
T |
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| Q |
113 |
nnnnnctctacttttaacaaaccctagccctactcc |
148 |
Q |
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| T |
3336158 |
tttttctctacttttaacaaaccctaactctactcc |
3336123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 52065312 - 52065272
Alignment:
| Q |
202 |
cacacatatttcactcatccatatttccatatacatgttttt |
243 |
Q |
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| T |
52065312 |
cacacatatttcactcatccata-ttccatatacatgctttt |
52065272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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