View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19261_low_6 (Length: 333)
Name: NF19261_low_6
Description: NF19261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19261_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 102 - 333
Target Start/End: Original strand, 11515305 - 11515536
Alignment:
| Q |
102 |
ccttagaggattcaattctgaatgtgtccttcaattgacgacaatccaattgcctatgcaggttctgtgtttttagggccatggacaccggagagtgtcg |
201 |
Q |
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| T |
11515305 |
ccttagaggattcaattctgaacgtgtccttgaattgatgacaatccaattgcctgtgcaggttctgtgtttttagggtcgtggacaccggagagtgtcg |
11515404 |
T |
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| Q |
202 |
gtgattatgcaagtgggacaaaccatgtccttcctacttatggatatgcaagaatgtatagtggcgtgtcattggactctttcctcaagtacataactgt |
301 |
Q |
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| T |
11515405 |
gtgattatgcaagtgggacaaaccatgtccttcctacttatggatatgcaagaatgtatagtggcgtgtcattggactctttcctcaagtacataactgt |
11515504 |
T |
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| Q |
302 |
gcagtctctcacagaggaaggtctaagaaaac |
333 |
Q |
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| T |
11515505 |
acagtctctcacagaggaaggtctaagaaaac |
11515536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 11514819 - 11514917
Alignment:
| Q |
10 |
gcagagaagtgggagagttttattgagaatgcaggtaaaatagtctggatttttcttgttggtgta-nnnnnnnatgtctgcattccgcaaccccttag |
107 |
Q |
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| T |
11514819 |
gcagagaagtgggagagttttattgagaatgcaggtaaaatagtctggatttttcttgttggtgtattttttttatgtctgcattccgcaaccccttag |
11514917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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