View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19262_high_1 (Length: 1164)

Name: NF19262_high_1
Description: NF19262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19262_high_1
NF19262_high_1
[»] chr2 (1 HSPs)
chr2 (12-1145)||(42959918-42961055)
[»] chr5 (4 HSPs)
chr5 (786-952)||(35607889-35608055)
chr5 (709-866)||(8309412-8309561)
chr5 (139-188)||(3094265-3094314)
chr5 (139-188)||(3085419-3085468)
[»] chr8 (4 HSPs)
chr8 (12-490)||(5504339-5504817)
chr8 (796-873)||(11791979-11792056)
chr8 (796-861)||(29858345-29858410)
chr8 (1034-1145)||(5503648-5503759)
[»] chr6 (5 HSPs)
chr6 (796-863)||(7712361-7712428)
chr6 (711-767)||(29246407-29246463)
chr6 (800-862)||(10890479-10890538)
chr6 (788-850)||(473905-473967)
chr6 (797-862)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (788-861)||(3182435-3182508)
chr7 (804-863)||(37702076-37702135)
[»] chr3 (2 HSPs)
chr3 (796-872)||(13873370-13873445)
chr3 (809-862)||(32783461-32783514)
[»] chr4 (2 HSPs)
chr4 (804-863)||(56081265-56081324)
chr4 (711-768)||(40829662-40829719)
[»] chr1 (1 HSPs)
chr1 (817-872)||(2443403-2443458)


Alignment Details
Target: chr2 (Bit Score: 1089; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 1089; E-Value: 0
Query Start/End: Original strand, 12 - 1145
Target Start/End: Original strand, 42959918 - 42961055
Alignment:
12 catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42959918 catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc 42960017  T
112 gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42960018 gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat 42960117  T
212 gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42960118 gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg 42960217  T
312 gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacattt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42960218 gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacattt 42960317  T
412 gtgttgatcaatttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttct 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42960318 gtgttgatcaatttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttct 42960417  T
512 tcacaaaagctttaatggattctgctgatctttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaaggaaaaatcacttctatgca 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
42960418 tcacaaaagctttaatggattctgctgatctttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaatgaaaaattacttctatgca 42960517  T
612 tgttacttgttagtttctattttactattcaatgctcgtatagacattgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgcg 711  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
42960518 tattacttgttagtttctattttactattcaatgctcgtatagacgttgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgtg 42960617  T
712 gttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaattaacc----atatactaaacttgattagccgcatatttgaact 807  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
42960618 gttaattgtgttcggtaaatggttaatgagttgcgacatcttgtaatattcattaattaaccatatatatactaaacttgattagccgcatatttgaact 42960717  T
808 atgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatacctcagctga 907  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42960718 atgttaaccatctaatttgttgtcgaaatttaatgacaaatttgtgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatacctcagctga 42960817  T
908 tagcaaaccatggtggcaatgaatgctatcattggtctgtccaaatccacagctagcttcaatatacacacccttattggtaataccaactgtttctatc 1007  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42960818 tagcaaaccatggtggcaatgaatgctatcattggtctgtccaaatccacagctagcttcaatatacacacccttattggtaataccaactgtttctatc 42960917  T
1008 aatgattgtttaactgatttcttaagaggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacaggga 1107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42960918 aatgattgtttaactgatttcttaagaggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacaggga 42961017  T
1108 ttttcaagttctcaagttctgcttttgggccaattcca 1145  Q
    ||||||||||||||||||||||||||||||||||||||    
42961018 ttttcaagttctcaagttctgcttttgggccaattcca 42961055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 5e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 786 - 952
Target Start/End: Complemental strand, 35608055 - 35607889
Alignment:
786 tgattagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactcaaattaggtgatg 885  Q
    |||||| | |||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||| ||||| ||||| | | ||||||||||||||||||    
35608055 tgattaactgcatatttgaactatgttaaccatctaatttgttctagaaatttaatgtcaattttgtgtgtgaaaattaaacaactcaaattaggtgatg 35607956  T
886 agtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaa 952  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
35607955 agtgaagacatatctcagctgacaacaaaccatggtggcaatgaatgctgtcattggtctgtccaaa 35607889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 709 - 866
Target Start/End: Complemental strand, 8309561 - 8309412
Alignment:
709 gcggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaattaaccatatactaaacttgattagccgcatatttgaacta 808  Q
    ||||||||||||| ||||||||||||||  ||||||||| |||||||  |||||||||||    ||| || |  || | |||| || |||| ||||| |     
8309561 gcggttaattgtgctcggtgaatggttagtgagttgcgatatcttgt--tattcattaat----catctattggacataattaaccacataattgaattt 8309468  T
809 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataaca 866  Q
    ||||||||||||| |||| ||| ||||||| ||| ||||  |||||||||||||||||    
8309467 tgttaaccatctattttgctgttgaaatttgatgtcaaa--tttgtgtcaaaataaca 8309412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 3094314 - 3094265
Alignment:
139 ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc 188  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||| |||||    
3094314 ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc 3094265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 3085468 - 3085419
Alignment:
139 ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc 188  Q
    ||||||||||| ||||| || || |||||||||||||||||||| |||||    
3085468 ccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttc 3085419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 6e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 12 - 490
Target Start/End: Complemental strand, 5504817 - 5504339
Alignment:
12 catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc 111  Q
    ||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || ||||||| |||  |||||||||||| |||     
5504817 catcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgtcaacgtcaagaaccttataatca 5504718  T
112 gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat 211  Q
    |     |  ||||| || ||||| ||||||||||| || |||||||| ||||| ||||||||| | || ||||| ||||| ||   ||| |||||| |||    
5504717 gggctaactacctttcccacatgacatccaccatggtaatgccaaattgtgatgacagtgtctttgcagaactgctctagggaagatgtgtcattggcat 5504618  T
212 gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg 311  Q
    | |||||||| | ||||| | ||| ||||||| |   ||||||||||   ||||  |||| | ||| ||| || |||   ||||||||||| | ||||||    
5504617 gttttggtatgaagttgacagtagtcttcacactaaggttaagaagtctctctgcggtttctcttttacataatgtgtagtttgtgaagtgttctgactg 5504518  T
312 gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacattt 411  Q
    ||| |||||  | || |  | ||| |||||||| ||||| |  | |||||| || ||||||||||||||||||||||||||||| || |||| ||||||     
5504517 gactactttaatggccatgctgatcccttcgacgcagcgctttaaatcgtatggatgactgaagtagttgaaggtaacagcaggattttcattcacattg 5504418  T
412 gtgttgatcaatttgagatcacctgttgaccatggattagcaacttttgataagatgaatcctcccttaaatgcttcaa 490  Q
    ||||||| ||| ||||| ||||||  |||||| | | |  ||||||| || ||||  || |||||||| ||||||||||    
5504417 gtgttgaccaacttgagctcacctactgaccaagcactgccaactttggacaagacaaagcctcccttgaatgcttcaa 5504339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 796 - 873
Target Start/End: Complemental strand, 11792056 - 11791979
Alignment:
796 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactca 873  Q
    ||||| |||| | |||||||| ||||||||||||||||||||| ||| |||||| || ||||||||| ||| ||||||    
11792056 catatgtgaattgtgttaaccgtctaatttgttgtcgaaatttgatgtcaaattcttatgtcaaaatcacacaactca 11791979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 796 - 861
Target Start/End: Complemental strand, 29858410 - 29858345
Alignment:
796 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaa 861  Q
    |||||||||| |||||||||| ||||| |||  |||||||||| ||| ||||||||||| ||||||    
29858410 catatttgaattatgttaaccttctaaattgacgtcgaaatttgatgtcaaatttttgtttcaaaa 29858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1034 - 1145
Target Start/End: Complemental strand, 5503759 - 5503648
Alignment:
1034 aggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgctttt 1133  Q
    ||||||||||| ||||||||| ||||||||   ||| ||||||||||||||    |||| ||| ||||| | ||| |||||||||| ||||||  ||||     
5503759 aggaacaaaaactgtgttcataggattatctatcattcccttcccaacaaaaggattgttaaggaccactgagatgttcaagttctgaagttcatcttta 5503660  T
1134 gggccaattcca 1145  Q
    || |||||||||    
5503659 ggaccaattcca 5503648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 796 - 863
Target Start/End: Original strand, 7712361 - 7712428
Alignment:
796 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 863  Q
    |||||||||||||||||||||||||||  ||||||||||||||  |  ||||||  ||||||||||||    
7712361 catatttgaactatgttaaccatctaaactgttgtcgaaatttgttatcaaattcgtgtgtcaaaata 7712428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 711 - 767
Target Start/End: Original strand, 29246407 - 29246463
Alignment:
711 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa 767  Q
    |||||||| ||||| ||| |||||||| ||||||||||| ||||| |||||||||||    
29246407 ggttaattatgttcagtgtatggttaatgagttgcgacaccttgttatattcattaa 29246463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 800 - 862
Target Start/End: Original strand, 10890479 - 10890538
Alignment:
800 tttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 862  Q
    |||||||| ||||||||||||| ||||||||||||| |||||| ||||  |||||||||||||    
10890479 tttgaactctgttaaccatctagtttgttgtcgaaa-ttaatgtcaaa--tttgtgtcaaaat 10890538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 788 - 850
Target Start/End: Original strand, 473905 - 473967
Alignment:
788 attagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaattt 850  Q
    ||||||| ||||| | ||||||||||| |||||||||||| || ||||||| ||| |||||||    
473905 attagccacatatgtaaactatgttaatcatctaatttgtggttgaaatttcatgtcaaattt 473967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 797 - 862
Target Start/End: Original strand, 12117149 - 12117214
Alignment:
797 atatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 862  Q
    ||||||||||||  |||||||| ||| ||||||| ||| ||| ||| ||||||| |||||||||||    
12117149 atatttgaactacattaaccatataaattgttgttgaagtttgatgtcaaatttgtgtgtcaaaat 12117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 788 - 861
Target Start/End: Complemental strand, 3182508 - 3182435
Alignment:
788 attagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaa 861  Q
    ||||||| ||||||| |||||  |||||||||||| | |||||||||||||  || ||||||||||| ||||||    
3182508 attagccacatattttaactaccttaaccatctaaatagttgtcgaaatttgttgtcaaatttttgtatcaaaa 3182435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 804 - 863
Target Start/End: Original strand, 37702076 - 37702135
Alignment:
804 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 863  Q
    |||||| | ||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||    
37702076 aactatatcaactatctaatttgttgttgaaatttgatgacaaatttgtgtttcaaaata 37702135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 796 - 872
Target Start/End: Complemental strand, 13873445 - 13873370
Alignment:
796 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 872  Q
    ||||||| |||||||||||| || || ||| |||||||| ||||||| | ||||||||||||||| ||||| |||||    
13873445 catatttaaactatgttaacaatttagttttttgtcgaattttaatgtc-aatttttgtgtcaaagtaacacaactc 13873370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 809 - 862
Target Start/End: Original strand, 32783461 - 32783514
Alignment:
809 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 862  Q
    |||||||| ||||||||||||| ||||||| | | ||||||| |||||||||||    
32783461 tgttaaccgtctaatttgttgttgaaatttgaagtcaaatttgtgtgtcaaaat 32783514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 804 - 863
Target Start/End: Original strand, 56081265 - 56081324
Alignment:
804 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 863  Q
    |||| |||||| ||||||| |||||||| || ||| ||| ||||||||||||||||||||    
56081265 aactgtgttaatcatctaaattgttgtcaaatttttatgtcaaatttttgtgtcaaaata 56081324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 711 - 768
Target Start/End: Original strand, 40829662 - 40829719
Alignment:
711 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat 768  Q
    ||||||||||| || ||| |||||||| ||||||| ||| ||||| ||||||||||||    
40829662 ggttaattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaat 40829719  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 817 - 872
Target Start/End: Complemental strand, 2443458 - 2443403
Alignment:
817 atctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 872  Q
    |||||||||| ||||||||||| |||   ||||||||||||||||||||| |||||    
2443458 atctaatttggtgtcgaaatttgatgttgaatttttgtgtcaaaataacacaactc 2443403  T

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