View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19262_high_5 (Length: 278)
Name: NF19262_high_5
Description: NF19262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19262_high_5 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 36752 - 36855
Alignment:
| Q |
173 |
tttagtcaaaagggggttgtgtatgacgcgacaagtaggaataatgcatccaaaggattttaaattagactcgaagtaccattccaaaaatatcaagtac |
272 |
Q |
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| T |
36752 |
tttagtcaaaagggg-ttgtgtatgacgcgacaagtaggaataatgt-tccagaggattttacattagactcgaagtaccattccaaaaatatcaagtac |
36849 |
T |
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| Q |
273 |
agtaac |
278 |
Q |
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|||||| |
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| T |
36850 |
agtaac |
36855 |
T |
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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 3165687 - 3165790
Alignment:
| Q |
173 |
tttagtcaaaagggggttgtgtatgacgcgacaagtaggaataatgcatccaaaggattttaaattagactcgaagtaccattccaaaaatatcaagtac |
272 |
Q |
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| T |
3165687 |
tttagtcaaaagggg-ttgtgtatgacgcgacaagtaggaataatgt-tccagaggattttacattagactcgaagtaccattccacaaatatcaagtat |
3165784 |
T |
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| Q |
273 |
agtaac |
278 |
Q |
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| T |
3165785 |
agtaac |
3165790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 45266131 - 45266062
Alignment:
| Q |
7 |
aagaatatggaattcaagaggttccaccaactcttgtaaaagaaggagtcactgatctttctctatcacc |
76 |
Q |
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| T |
45266131 |
aagaaaatggaactcaagaggttccaccaactcttgtagaagaaggagtcgctgagctttctctatcacc |
45266062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 47861408 - 47861477
Alignment:
| Q |
7 |
aagaatatggaattcaagaggttccaccaactcttgtaaaagaaggagtcactgatctttctctatcacc |
76 |
Q |
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| T |
47861408 |
aagaaaatggaactcaagaggttccaccaactcttgtagaagaaggagtcgctaagctttctctatcacc |
47861477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 38256180 - 38256117
Alignment:
| Q |
13 |
atggaattcaagaggttccaccaactcttgtaaaagaaggagtcactgatctttctctatcacc |
76 |
Q |
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| T |
38256180 |
atggaattcaagaggttccaccaactcttgtaaaataaggagtcgttgagctttctttatcacc |
38256117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 38256060 - 38256023
Alignment:
| Q |
134 |
attaatcaaaacagttaactattttgaaaaccagttca |
171 |
Q |
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| T |
38256060 |
attaatcaaaaaagttaactattttgaaaaccagttca |
38256023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 52421897 - 52421861
Alignment:
| Q |
135 |
ttaatcaaaacagttaactattttgaaaaccagttca |
171 |
Q |
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| T |
52421897 |
ttaatcaaaacagttaactattttgaaaaccagttca |
52421861 |
T |
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