View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19262_low_2 (Length: 462)
Name: NF19262_low_2
Description: NF19262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19262_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 6035872 - 6036308
Alignment:
| Q |
11 |
taattctgaaacatattcaatgaaagacaaacacaatcttttcaatcagaagtttagggaaatatgtgaagttcagtctatgtggcgaaataataattta |
110 |
Q |
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| T |
6035872 |
taattctgaaacatattcaatgaaagacaaacacaatcttttaaatcagaagtttagggaaatatgtgaagttcagtctatgtggcgaaataataattta |
6035971 |
T |
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| Q |
111 |
gatagaaagcattttgtttccggcatattgaaacttataattggtagatgttgttggtagaaatgcaaacgagtatatcgagtatggaatgtctaacatt |
210 |
Q |
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| T |
6035972 |
gatagaaagcattttgtttccggcatattgaaacttataattggtagatgttgttggtagaaatgcaaacgagtatatcgagtatggaatgtctaacatt |
6036071 |
T |
|
| Q |
211 |
aaagatcatctcagccattcgtttttattagaggatgttgattctgtcagaggaccagacgaaaatcagttagttatttagtatttagtgagggtcggtt |
310 |
Q |
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| T |
6036072 |
aaagatcatctcaaccgttcgtttttattagaggatgttgattctgtcagagcaccagacgaaaattagttagttatttagtatttagtgagggtcggtt |
6036171 |
T |
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| Q |
311 |
agtgttcatgatagttactgcatctcaatttaaaatgtataaatagaatactgagaagttggaagttgcatctcaataaaactctcaaatatggtttgct |
410 |
Q |
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| T |
6036172 |
agtgttcatgatagttactgcatctcaatttaaaatgtaaaaatagaatactgagaagttggaagttgcatctcaataaaactctcaaatatggtttgct |
6036271 |
T |
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| Q |
411 |
ttttatcatcacaaatagttaccataaatgataatta |
447 |
Q |
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| T |
6036272 |
ttttatcatcacaaatagttaccatcaatgataatta |
6036308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 31493070 - 31492992
Alignment:
| Q |
12 |
aattctgaaacatattcaatgaaagacaaacacaatcttttcaatcagaagtttagggaaatatgtgaagttcagtcta |
90 |
Q |
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| T |
31493070 |
aattctgaagcagattcaatgaaagacaaactcagtttgttcaatcagaagtttagggagatgtgtgaaattcaatcta |
31492992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 31386748 - 31386796
Alignment:
| Q |
49 |
ttttcaatcagaagtttagggaaatatgtgaagttcagtctatgtggcg |
97 |
Q |
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| T |
31386748 |
ttttcaatcagaagtttagggagacatgtgaaattcagtctatatggcg |
31386796 |
T |
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