View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19262_low_4 (Length: 372)
Name: NF19262_low_4
Description: NF19262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19262_low_4 |
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| [»] scaffold0060 (2 HSPs) |
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| [»] scaffold0158 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 187 - 350
Target Start/End: Original strand, 20808946 - 20809109
Alignment:
| Q |
187 |
gagaaaatccatgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtcagtgcactattactcagatg |
286 |
Q |
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| T |
20808946 |
gagaaaatccatgactataaatatacgtcatatattgagccatcaattgtactatcttatgtgttgcatactcgtcagtcagtgcactattactcagatg |
20809045 |
T |
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| Q |
287 |
agaattatatttgatgtactcgtcagttgatacttcaatcagatgtttgaggtagtaccatgtt |
350 |
Q |
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| T |
20809046 |
ggaattatatttgatgtactcgtcagttagtactttcatcagatgtttgaggtagtaccatgtt |
20809109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 20808729 - 20808844
Alignment:
| Q |
55 |
cgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgtttcgaaaagtaaataaaagaatgttgccatacaagttaagaattcgtcagtcac |
154 |
Q |
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| T |
20808729 |
cgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgtttcataaagtaaataaaagaatgttgccatacaagttaagaattcatcagtgac |
20808828 |
T |
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| Q |
155 |
ctatggcatgggacta |
170 |
Q |
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| T |
20808829 |
ctatggcatgggacta |
20808844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 6286544 - 6286661
Alignment:
| Q |
197 |
atgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtcagtgcactattactcagatgagaattatat |
296 |
Q |
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| T |
6286544 |
atgactatagatatacgttatgtattaagccatcagttgtactaccttgtctattgtatactcgttagtcggtgcactattactcagatatgaattatat |
6286643 |
T |
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| Q |
297 |
ttgatgtactcgtcagtt |
314 |
Q |
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|| ||||| ||| ||||| |
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| T |
6286644 |
ttaatgtaatcgccagtt |
6286661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 172 - 350
Target Start/End: Original strand, 37934 - 38108
Alignment:
| Q |
172 |
aaaggataagttcatgagaaaatccatgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtcagtgc |
271 |
Q |
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| T |
37934 |
aaaggataa-ttcaggagaaaatccatgactataaatacacgttatatattgagccatcagttgtactaccttatgtattgcatactcgtcagtcagtgc |
38032 |
T |
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| Q |
272 |
actattactcagatgagaattatatttgatgtactcgtcagttgatacttcaatcagatgtttgaggtagtaccatgtt |
350 |
Q |
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| T |
38033 |
gctattactcagatgagaattttatttgatgt--tcgtcggttagtacttccatcagatgtttgagg-agtaccatgtt |
38108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 36849 - 36950
Alignment:
| Q |
1 |
cagtaacaagtatatgaatgggaaaacactactcagaacatgaatgcggttactcgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgt |
100 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36849 |
cagtaacaagtatctgaatggaaaaacactactcagaacatgaatgtggttactcaaatgcaactttagttgtgaagtttaaagagtttaaacacgatgt |
36948 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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| T |
36949 |
tt |
36950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 11876 - 11991
Alignment:
| Q |
55 |
cgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgtttcgaaaagtaaataaaagaatgttgccatacaagttaagaattcgtcagtcac |
154 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| || |
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| T |
11876 |
cgaatggaattttagttgtgaagtttaaagagtttaaacacaatgtttcagaaagtaaataaaagaatgttgccatataagttaagaattcatcagtgac |
11975 |
T |
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| Q |
155 |
ctatggcatgggacta |
170 |
Q |
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|||||||||||||||| |
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| T |
11976 |
ctatggcatgggacta |
11991 |
T |
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