View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19262_low_8 (Length: 215)
Name: NF19262_low_8
Description: NF19262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19262_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 40297117 - 40296903
Alignment:
| Q |
1 |
ttacagttgaagataaagcagagtattctaaaataaaacgaaaatactaatacccattatggttcccattatgaacagaatggcaaccatgtggtattct |
100 |
Q |
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| T |
40297117 |
ttacagttgaagataaagcagagtattctaaaataaaacgaaaatactaatacccattatggttcccattatgaacagaatggcaaccatgtggtattct |
40297018 |
T |
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| Q |
101 |
ttgctactgtcaaccatgtcttactgaacaaagacctgcaaacaaaataaaaagacgannnnnnnnnnnnccagatttgtatatgaaagtaagtgctttt |
200 |
Q |
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| T |
40297017 |
ttgctactgtcaaccatgtcttacagaacaaagacctgcaaacaaaataaaaagacgattttttgtttttccagatttgtatatgaaagtaagtgctttt |
40296918 |
T |
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| Q |
201 |
ctcaaatggctttaa |
215 |
Q |
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||||||||||||||| |
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| T |
40296917 |
ctcaaatggctttaa |
40296903 |
T |
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