View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19263_high_2 (Length: 562)
Name: NF19263_high_2
Description: NF19263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19263_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Complemental strand, 30726937 - 30726391
Alignment:
| Q |
14 |
cagttttatatcctataactagatctcattgttaattactttctacacactctacacttgatatcaagatggaggaatcactaaatatgatgtggatgaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30726937 |
cagttttatatcctataactagatctcattgttaattactttctacacactctacacttgatatcaagatggaggaatcactaaatatgatgtggatgaa |
30726838 |
T |
|
| Q |
114 |
aaggaaacaaatcttgcactcacacaatgaagtagtaccatcatttggaaccatcaacaataggtcttgggaggaaaaagcttttgcagaagatgcagct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30726837 |
aaggaaacaaatcttgcactcacacaatgaagtagtaccatcatttggaaccatcaacaataggtcttgggaggaaaaagcttttgcagaagatgcagct |
30726738 |
T |
|
| Q |
214 |
aggatacttggtggatgtatatggcctccaagatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30726737 |
aggatacttggtggatgtatatggcctccaagatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatg |
30726638 |
T |
|
| Q |
314 |
ttcatagaagagatagagctaagctcaaacaaagtcttaaccaccataatgaattagaacttcattctcatcacaaaaatcattgtaagttcttcactct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30726637 |
ttcatagaagagatagagctaagctcaaacaaagtcttaaccaccataatgaattagaacttcattctcatcacaaaaatcattgtaagttcttcactct |
30726538 |
T |
|
| Q |
414 |
tcacttagattgttatcttaactttttactaattgttactctaaattatggtacagttacaacaagcagagataactcttctacttggccatcaactaca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30726537 |
tcacttagattgttatcttaactttttactaattgttactctaaattatgttacagttacaacaagcagagataactcttctacttggccatcaactaca |
30726438 |
T |
|
| Q |
514 |
tatacacaagaaaactgttttcagccaaacatgtcttcattttcttc |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30726437 |
tatacacaagaaaactgttttcagccaaacatgtcttcatattcttc |
30726391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 181 - 352
Target Start/End: Original strand, 34522528 - 34522702
Alignment:
| Q |
181 |
tgggaggaaaaagcttttgcagaagatgcagctagga---tacttggtggatgtatatggcctccaagatcttactcatgtcacttctgtaaaagagagt |
277 |
Q |
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||||| ||||| ||||||||||||||||||||||||| |||| ||| | || ||||| ||||||| ||| |||||| |||| ||||||||||||| |
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| T |
34522528 |
tgggaagaaaaggcttttgcagaagatgcagctaggaatatactgaatggtagcatgtggccaccaagattttattcatgtaacttttgtaaaagagagt |
34522627 |
T |
|
| Q |
278 |
ttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaacaaagtctta |
352 |
Q |
| |
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||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||| |
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| T |
34522628 |
ttaggtctgctcaagctcttggtggtcacatgaatattcataggagagatagagctaggctcaaacaaaatctta |
34522702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 6889978 - 6889811
Alignment:
| Q |
181 |
tgggaggaaaaagcttttgcagaagatgcagct--aggat-acttggtggatgtatatggcctccaagatcttactcatgtcacttctgtaaaagagagt |
277 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| ||| | |||||| |||||||||||||| |||||||| || || ||| ||| |||| |||||||| |
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| T |
6889978 |
tgggaagaacaagcttttgctgaagatgcagctgcagggtcacttggaggatgtatatggccaccaagatcatattcttgtagcttttgtagaagagagt |
6889879 |
T |
|
| Q |
278 |
ttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaacaa |
345 |
Q |
| |
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||||||| || ||||| |||||||| || |||||||||||||||| ||||||||| | ||||||||| |
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| T |
6889878 |
ttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagcaagactcaaacaa |
6889811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 30978567 - 30978506
Alignment:
| Q |
268 |
aaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatag |
329 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||| |
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| T |
30978567 |
aaaagagagtttaggtcagctcaagctttaggtggacatatgaatgtccatagaagagatag |
30978506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 33406401 - 33406448
Alignment:
| Q |
289 |
caagctttaggtggtcacatgaatgttcatagaagagatagagctaag |
336 |
Q |
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| T |
33406401 |
caagctttaggtggtcacatgaatattcataggaaagatagagctaag |
33406448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 30956708 - 30956660
Alignment:
| Q |
284 |
ctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagc |
332 |
Q |
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||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
30956708 |
ctgctcaagctttaggtggacacatgaacattcatagaaaagatagagc |
30956660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 8963140 - 8963100
Alignment:
| Q |
84 |
ggaggaatcactaaatatgatgtggatgaaaaggaaacaaa |
124 |
Q |
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| T |
8963140 |
ggaggaatctcaaaatataatgtggatgaaaaggaaacaaa |
8963100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 31844622 - 31844524
Alignment:
| Q |
234 |
atggcctccaagatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagc |
332 |
Q |
| |
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|||||| |||||||| ||| ||||| ||| |||| || |||||||| || |||||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
31844622 |
atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagc |
31844524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 23010935 - 23010879
Alignment:
| Q |
289 |
caagctttaggtggtcacatgaatgttcatagaagagatagagctaagctcaaacaa |
345 |
Q |
| |
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||||| ||||| || ||||||||| | ||||||||||||||||| |||||||||||| |
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| T |
23010935 |
caagcattaggaggccacatgaatatccatagaagagatagagccaagctcaaacaa |
23010879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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