View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19263_high_4 (Length: 543)

Name: NF19263_high_4
Description: NF19263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19263_high_4
NF19263_high_4
[»] chr7 (23 HSPs)
chr7 (273-531)||(23866348-23866609)
chr7 (270-531)||(9650515-9650778)
chr7 (229-531)||(8076325-8076631)
chr7 (271-530)||(9008436-9008697)
chr7 (228-511)||(19640599-19640881)
chr7 (266-491)||(27256556-27256779)
chr7 (266-491)||(40864916-40865137)
chr7 (425-531)||(44510379-44510487)
chr7 (228-419)||(44509886-44510078)
chr7 (310-506)||(16372711-16372921)
chr7 (228-427)||(26341615-26341814)
chr7 (447-511)||(10498383-10498447)
chr7 (447-511)||(10503412-10503476)
chr7 (269-511)||(4579819-4580062)
chr7 (269-427)||(42626120-42626277)
chr7 (450-511)||(13344884-13344945)
chr7 (228-332)||(47102015-47102121)
chr7 (290-366)||(4930689-4930764)
chr7 (450-491)||(13337016-13337057)
chr7 (266-351)||(12799868-12799953)
chr7 (266-351)||(26286672-26286756)
chr7 (303-427)||(8268700-8268826)
chr7 (266-351)||(2595305-2595390)
[»] chr5 (32 HSPs)
chr5 (228-531)||(12044647-12044954)
chr5 (228-531)||(3666190-3666497)
chr5 (228-531)||(32461056-32461363)
chr5 (228-531)||(6154922-6155228)
chr5 (228-511)||(36937023-36937305)
chr5 (228-511)||(36941777-36942059)
chr5 (228-511)||(556996-557278)
chr5 (228-511)||(561768-562050)
chr5 (229-511)||(41996961-41997245)
chr5 (229-511)||(42001730-42002014)
chr5 (228-491)||(31731857-31732119)
chr5 (266-491)||(13301042-13301263)
chr5 (338-491)||(21323598-21323750)
chr5 (346-531)||(23977218-23977406)
chr5 (356-488)||(9911468-9911600)
chr5 (341-408)||(1429732-1429799)
chr5 (228-422)||(29167461-29167655)
chr5 (266-511)||(39518710-39518965)
chr5 (266-511)||(39523349-39523604)
chr5 (266-427)||(26667681-26667841)
chr5 (266-427)||(26939278-26939438)
chr5 (266-427)||(40148304-40148464)
chr5 (228-427)||(36424046-36424245)
chr5 (228-427)||(37549640-37549839)
chr5 (228-366)||(7452222-7452360)
chr5 (266-427)||(9726282-9726442)
chr5 (266-422)||(37248329-37248486)
chr5 (266-351)||(36429194-36429278)
chr5 (228-349)||(37652438-37652559)
chr5 (309-418)||(23688511-23688620)
chr5 (470-511)||(3666145-3666186)
chr5 (470-531)||(15468807-15468870)
[»] chr4 (46 HSPs)
chr4 (228-531)||(47574937-47575244)
chr4 (270-531)||(13521540-13521803)
chr4 (228-529)||(41817064-41817364)
chr4 (228-489)||(3997574-3997836)
chr4 (316-491)||(42316207-42316379)
chr4 (345-511)||(40840635-40840799)
chr4 (266-489)||(7902662-7902885)
chr4 (338-491)||(34560740-34560894)
chr4 (338-511)||(39319868-39320036)
chr4 (344-468)||(43477635-43477757)
chr4 (426-531)||(31298097-31298204)
chr4 (266-429)||(39216631-39216795)
chr4 (321-498)||(31786035-31786208)
chr4 (350-531)||(8661071-8661252)
chr4 (228-422)||(8694126-8694320)
chr4 (266-427)||(19540708-19540869)
chr4 (302-420)||(8536651-8536770)
chr4 (228-427)||(31766279-31766478)
chr4 (228-366)||(5270912-5271050)
chr4 (340-511)||(12874838-12875023)
chr4 (266-430)||(16421443-16421607)
chr4 (267-427)||(19107017-19107176)
chr4 (451-523)||(42758479-42758553)
chr4 (228-427)||(5927706-5927905)
chr4 (432-512)||(12878538-12878615)
chr4 (266-428)||(19906644-19906806)
chr4 (432-511)||(48276368-48276443)
chr4 (266-379)||(51698375-51698487)
chr4 (266-428)||(33462893-33463054)
chr4 (266-422)||(37259393-37259546)
chr4 (302-420)||(2820208-2820328)
chr4 (447-511)||(8030064-8030127)
chr4 (266-430)||(55252067-55252231)
chr4 (266-366)||(31728919-31729018)
chr4 (266-351)||(31269507-31269591)
chr4 (266-351)||(31273996-31274080)
chr4 (465-511)||(16954607-16954653)
chr4 (269-419)||(6943196-6943346)
chr4 (290-366)||(15020077-15020151)
chr4 (447-508)||(33468704-33468764)
chr4 (316-420)||(15805217-15805321)
chr4 (302-366)||(32081689-32081753)
chr4 (447-511)||(32545409-32545473)
chr4 (432-490)||(39216814-39216869)
chr4 (266-335)||(42758386-42758455)
chr4 (465-509)||(55073548-55073592)
[»] chr6 (18 HSPs)
chr6 (269-531)||(24588733-24588998)
chr6 (228-531)||(8748062-8748366)
chr6 (320-491)||(2759990-2760159)
chr6 (338-445)||(6112403-6112509)
chr6 (347-523)||(15991282-15991457)
chr6 (445-531)||(6112683-6112771)
chr6 (265-430)||(4156882-4157047)
chr6 (270-427)||(12689380-12689536)
chr6 (266-366)||(16835687-16835786)
chr6 (453-523)||(15991469-15991540)
chr6 (453-523)||(15999131-15999202)
chr6 (266-365)||(17914056-17914154)
chr6 (228-422)||(17964047-17964241)
chr6 (266-365)||(6407390-6407489)
chr6 (266-427)||(11570273-11570435)
chr6 (318-366)||(14042056-14042104)
chr6 (447-511)||(14509285-14509348)
chr6 (447-511)||(17913897-17913960)
[»] chr1 (28 HSPs)
chr1 (232-531)||(18784070-18784372)
chr1 (228-511)||(3094389-3094671)
chr1 (228-511)||(8267348-8267631)
chr1 (338-511)||(33055340-33055515)
chr1 (338-491)||(41097581-41097733)
chr1 (341-511)||(40232990-40233161)
chr1 (261-426)||(17213989-17214151)
chr1 (323-511)||(39037296-39037479)
chr1 (228-427)||(51040999-51041198)
chr1 (228-366)||(10135794-10135932)
chr1 (266-428)||(16833878-16834040)
chr1 (269-427)||(16649166-16649323)
chr1 (228-366)||(10140562-10140700)
chr1 (270-412)||(28434167-28434308)
chr1 (266-366)||(39200290-39200389)
chr1 (266-349)||(19798529-19798611)
chr1 (269-428)||(7882389-7882548)
chr1 (318-365)||(9328099-9328146)
chr1 (432-491)||(7882314-7882370)
chr1 (269-427)||(47450757-47450915)
chr1 (447-511)||(16833785-16833848)
chr1 (327-409)||(27311375-27311459)
chr1 (323-366)||(2493461-2493504)
chr1 (318-365)||(9352945-9352992)
chr1 (266-366)||(25844220-25844320)
chr1 (228-427)||(26927209-26927408)
chr1 (432-491)||(23192537-23192593)
chr1 (318-362)||(36725124-36725168)
[»] chr8 (29 HSPs)
chr8 (228-531)||(43302196-43302503)
chr8 (266-491)||(8330915-8331138)
chr8 (229-511)||(31449378-31449659)
chr8 (228-511)||(4237853-4238135)
chr8 (228-511)||(4242592-4242874)
chr8 (320-511)||(34818311-34818500)
chr8 (338-491)||(25367609-25367761)
chr8 (338-491)||(37772025-37772177)
chr8 (306-424)||(17953542-17953662)
chr8 (311-424)||(15875269-15875383)
chr8 (266-427)||(15951080-15951241)
chr8 (266-422)||(44925450-44925605)
chr8 (432-511)||(40125605-40125680)
chr8 (266-410)||(17026350-17026494)
chr8 (266-410)||(17556842-17556986)
chr8 (266-351)||(18875917-18876001)
chr8 (266-351)||(38181772-38181856)
chr8 (327-420)||(7002064-7002158)
chr8 (323-420)||(40125481-40125578)
chr8 (266-349)||(19167131-19167213)
chr8 (455-511)||(17953706-17953762)
chr8 (266-351)||(1910484-1910568)
chr8 (447-531)||(14035717-14035803)
chr8 (266-366)||(17020818-17020917)
chr8 (266-366)||(17551255-17551354)
chr8 (302-366)||(13799434-13799499)
chr8 (461-510)||(15875422-15875471)
chr8 (432-475)||(17026271-17026311)
chr8 (432-475)||(17556763-17556803)
[»] chr2 (25 HSPs)
chr2 (290-523)||(35602210-35602445)
chr2 (266-531)||(10160272-10160540)
chr2 (274-511)||(30658476-30658712)
chr2 (228-511)||(30643423-30643706)
chr2 (269-491)||(6297447-6297667)
chr2 (266-511)||(17453134-17453373)
chr2 (416-531)||(19538664-19538781)
chr2 (324-523)||(19094080-19094295)
chr2 (269-427)||(18344831-18344988)
chr2 (266-511)||(30651229-30651484)
chr2 (266-422)||(17968490-17968645)
chr2 (266-427)||(12797333-12797493)
chr2 (266-410)||(25496852-25496995)
chr2 (266-428)||(42926171-42926333)
chr2 (318-410)||(13291112-13291205)
chr2 (266-410)||(25477824-25477967)
chr2 (475-531)||(28855283-28855341)
chr2 (266-366)||(9180256-9180355)
chr2 (290-400)||(28855544-28855650)
chr2 (266-422)||(1934522-1934675)
chr2 (228-422)||(19891961-19892155)
chr2 (269-366)||(9184950-9185046)
chr2 (318-364)||(17255011-17255057)
chr2 (447-529)||(38427170-38427254)
chr2 (447-511)||(29678068-29678131)
[»] scaffold0045 (2 HSPs)
scaffold0045 (269-497)||(83365-83595)
scaffold0045 (228-452)||(81174-81397)
[»] scaffold0182 (1 HSPs)
scaffold0182 (228-511)||(9393-9675)
[»] chr3 (37 HSPs)
chr3 (266-510)||(8888231-8888473)
chr3 (228-511)||(3033943-3034225)
chr3 (228-511)||(3692918-3693200)
chr3 (269-511)||(6595908-6596150)
chr3 (228-511)||(3672886-3673168)
chr3 (266-511)||(8069978-8070221)
chr3 (266-511)||(8883470-8883713)
chr3 (266-491)||(45904097-45904319)
chr3 (228-491)||(10585702-10585964)
chr3 (302-511)||(53358397-53358605)
chr3 (311-473)||(28125467-28125627)
chr3 (341-410)||(49019804-49019873)
chr3 (228-366)||(14438188-14438326)
chr3 (342-417)||(12900670-12900745)
chr3 (316-450)||(35456539-35456674)
chr3 (318-415)||(18011734-18011832)
chr3 (266-422)||(23665652-23665805)
chr3 (266-422)||(757893-758050)
chr3 (266-427)||(18467632-18467792)
chr3 (266-365)||(7570745-7570844)
chr3 (228-427)||(18472414-18472613)
chr3 (228-427)||(39775216-39775415)
chr3 (323-427)||(2207331-2207435)
chr3 (266-428)||(12965416-12965577)
chr3 (266-422)||(24037900-24038053)
chr3 (318-401)||(19339739-19339822)
chr3 (266-366)||(27709398-27709497)
chr3 (302-427)||(29350647-29350772)
chr3 (270-422)||(23660997-23661146)
chr3 (269-351)||(20520438-20520519)
chr3 (318-366)||(48431937-48431985)
chr3 (447-527)||(13166865-13166947)
chr3 (269-348)||(3656761-3656840)
chr3 (316-421)||(17025680-17025786)
chr3 (354-395)||(11997693-11997734)
chr3 (454-511)||(35457638-35457695)
chr3 (266-427)||(55326183-55326342)
[»] scaffold0060 (2 HSPs)
scaffold0060 (228-511)||(52429-52712)
scaffold0060 (228-431)||(47485-47688)
[»] scaffold0020 (1 HSPs)
scaffold0020 (266-491)||(792-1015)
[»] scaffold0041 (1 HSPs)
scaffold0041 (341-491)||(35330-35479)
[»] scaffold0061 (1 HSPs)
scaffold0061 (338-491)||(46098-46250)
[»] scaffold0017 (1 HSPs)
scaffold0017 (338-491)||(152537-152689)
[»] scaffold0352 (1 HSPs)
scaffold0352 (266-427)||(7513-7673)
[»] scaffold0628 (1 HSPs)
scaffold0628 (261-450)||(6748-6936)
[»] scaffold0011 (2 HSPs)
scaffold0011 (266-410)||(145958-146102)
scaffold0011 (434-511)||(146143-146218)
[»] scaffold0008 (2 HSPs)
scaffold0008 (304-397)||(256226-256319)
scaffold0008 (412-523)||(256113-256224)
[»] scaffold0002 (3 HSPs)
scaffold0002 (266-511)||(4374-4630)
scaffold0002 (269-427)||(443475-443632)
scaffold0002 (447-527)||(140041-140123)
[»] scaffold0054 (1 HSPs)
scaffold0054 (290-430)||(25858-25997)
[»] scaffold0184 (1 HSPs)
scaffold0184 (451-523)||(5190-5264)
[»] scaffold0226 (1 HSPs)
scaffold0226 (318-364)||(5897-5943)
[»] scaffold0012 (1 HSPs)
scaffold0012 (160-216)||(164895-164951)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 273 - 531
Target Start/End: Complemental strand, 23866609 - 23866348
Alignment:
Q  273 ccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaatta 371  Q
    ||||| ||||||| ||| |||||||||||| |||||||||| | | ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  23866609 ccttcggaattaagagtgttcttaagaccatatagtcccttgtcgatatattgtcccttcggaatcaagaatagtcttaagagcatagtcccttcaatta 23866510  T
Q  372 tttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaag 471  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23866509 tttatgtctttttagaataaataatattttaagatcatagtcccttttcggtataataagaatgatcttaaacatatatattcttcttcaattcttgaag 23866410  T
Q  472 aagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    |||| ||||||||| ||||||||| |||||||||||||||  |||||||||||| |||||||    
T  23866409 aagttagatgttagtatggtcgtaacaccatatttgagtggttgaaataccatattgatatt 23866348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 270 - 531
Target Start/End: Original strand, 9650515 - 9650778
Alignment:
Q  270 gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaa 368  Q
    |||||||| ||||||| ||| |||||||||||| |||||||||| | | |||||| |||||||| ||||||||||||||||||||| |||| |||| |||    
T  9650515 gtcccttcggaattaagagtgttcttaagaccatatagtcccttgtagatatattttcccttcggaatcaagaatggtcttaagagcatagcccct-caa 9650613  T
Q  369 ttatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttg 468  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  9650614 ttatttatgtctttttagaataaataatattttaagatcatagtcccttttcggtataataagaatggtcttaaacatatatattcttcttcaattcttg 9650713  T
Q  469 aagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    ||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||    
T  9650714 aagaagttagatgttagaatggtcgtaacaccatatttgagtggttgaaataccatattgatatt 9650778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 229 - 531
Target Start/End: Complemental strand, 8076631 - 8076325
Alignment:
Q  229 gacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtc 326  Q
    ||||||||||||| |||||||||||       ||| ||| |||||||||| ||||||| ||| ||||||||| || |||||| ||| | | |||||||||    
T  8076631 gacttgtgttgacaagtccttctcctttttctacttctttctgtcccttcggaattaagagtgttcttaagagcatatagtctcttgtcgatatattgtc 8076532  T
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtata 426  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  8076531 ccttcgaaatcaagaatgatcttaagagcatagtcccttcaattatttatgtctttttagaataaataatattttaagatcatagtcccttttcggtata 8076432  T
Q  427 ataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatac 524  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||| || || || ||||||||||||  ||||||||||||     
T  8076431 ataagaatgatcttaaacatatatattcttcttcaattcctaaagaagttagatgttcgaatgatcataacatcatatttgagtggttgaaataccatat 8076332  T
Q  525 tgatatt 531  Q
    |||||||    
T  8076331 tgatatt 8076325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 271 - 530
Target Start/End: Complemental strand, 9008697 - 9008436
Alignment:
Q  271 tcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaat 369  Q
    ||||||| ||||||| |||||||||||||||| ||||||| ||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  9008697 tcccttcggaattaagagtattcttaagaccatatagtcctttttcagtatatcgtcccttcgaaatcaagaatggtcttaagagcatagtcccttcagt 9008598  T
Q  370 tatttatgtctttttagaataaataatattttaagatcataatccc-tttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttg 468  Q
    |||||  |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  9008597 tattt--gtctctttagaataaataatattttaagatcatagtcccctttttggtataataagaatgatcttaaacatatatattcttcttcaattcatg 9008500  T
Q  469 aagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatat 530  Q
     |||||| ||||||||||||| |||||||||||||||||||||  |||||||||||| ||||||    
T  9008499 gagaagttagatgttagaatgatcgtagcaccatatttgagtggttgaaataccatattgatat 9008436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 19640881 - 19640599
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtc 326  Q
    |||||||||||||| |||| ||||||       |||||||||| |||||| || |||| ||| ||||||||||||  ||| ||||||| ||| |||||||    
T  19640881 cgacttgtgttgacaagtcattctcctttttctactccttctgccccttc-gagttaagagtgttcttaagacca--tagacccttttcggtttattgtc 19640785  T
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtata 426  Q
    | ||| |||  |||||||||||||| |  ||||||||| | ||| ||||||||| ||||||||||||||||||||| ||||||| ||| |||| ||||||    
T  19640784 ctttcaaaactaagaatggtcttaaaaacatagtccctactattgtttatgtctctttagaataaataatattttatgatcatagtcc-ttttcggtata 19640686  T
Q  427 ataaaaatgatcttaaacatatatat--tcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||| |||||||||||||||||||||  |||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  19640685 ataagaatgatcttaaacatatatatattcttcttttattcatgaagaagttagatgttagaatggtcgtagcaccatatttgagtg 19640599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 266 - 491
Target Start/End: Complemental strand, 27256779 - 27256556
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| |  | ||| |||| ||| |||| ||  ||||||||||||||||| |||||||||    
T  27256779 ttctgtcccttcagaattaagagtgttcttaagacca--tagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtccct 27256682  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaat 463  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||  |||||||||||||||||||    
T  27256681 tcaattatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtataataaagatgatcttaa--atatatattcttcttcaat 27256584  T
Q  464 tcttgaagaagtaagatgttagaatggt 491  Q
    ||||| |||| |  ||||||||||||||    
T  27256583 tcttggagaaattggatgttagaatggt 27256556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 266 - 491
Target Start/End: Original strand, 40864916 - 40865137
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| |  | ||| |||| ||| |||| ||  ||||||||||||||||| |||||||||    
T  40864916 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtccct 40865013  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaat 463  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||  ||||||||| ||||||||||| ||||||||||    |||||||||||||||||    
T  40865014 tcaattatttatgtctctttagaaaaaataatattctaagatcatggtccctttttcggtataataaagatgatcttaa----atatattcttcttcaat 40865109  T
Q  464 tcttgaagaagtaagatgttagaatggt 491  Q
    ||||| ||||||   |||||||||||||    
T  40865110 tcttggagaagttgaatgttagaatggt 40865137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 425 - 531
Target Start/End: Original strand, 44510379 - 44510487
Alignment:
Q  425 taataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccat 522  Q
    |||||| |||||||||||||||||| ||||||||||||||| || | |||| |||||||||||||||||||||||||||||||||||  |||||||||||    
T  44510379 taataagaatgatcttaaacatatacattcttcttcaattcatggaaaagttagatgttagaatggtcgtagcaccatatttgagtggttgaaataccat 44510478  T
Q  523 actgatatt 531  Q
    | |||||||    
T  44510479 attgatatt 44510487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 44509886 - 44510078
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttc-tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||| |||  ||||||||| ||||||| ||| |||||||||||| ||  | |||| | |||||||||     
T  44509886 cgacttgtgttgacaagtccttctcctttttctacttctttatgtcccttcagaattaagagtgttcttaagaccatattattccttgtcggtatattga 44509985  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttt 419  Q
     ||||||||||||| |||||||||||||| ||||||||||| || ||| || ||| ||  ||||||||||| ||||||||||||| ||||||||    
T  44509986 tccttcgaaatcaataatggtcttaagagcatagtcccttcgataattcat-tctcttcggaataaataatgttttaagatcatagtccctttt 44510078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 506
Target Start/End: Complemental strand, 16372921 - 16372711
Alignment:
Q  310 ctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaat-tatttatgtctttttagaataaataatattttaagatca 408  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||  ||||||||||| || | ||||||||  ||  |||||||||||| ||||||||||    
T  16372921 ctttttggtataatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgatatttttatgtcccttcggaataaataatagtttaagatca 16372822  T
Q  409 taatcccttttt-ggtataat--------aaa--------aatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    || ||||||||| ||||||||        |||        ||||||||||||   |||||||||| |||||||||||||||||| ||||||||||||| |    
T  16372821 tagtccctttttcggtataatgtcacttcaaaaaattatgaatgatcttaaa---atatattcttattcaattcttgaagaagttagatgttagaatgat 16372725  T
Q  492 cgtagcaccatattt 506  Q
     ||||||||||||||    
T  16372724 -gtagcaccatattt 16372711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 228 - 427
Target Start/End: Complemental strand, 26341814 - 26341615
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||||||| ||| ||||||||||  |||| |||||||| ||| || |||    
T  26341814 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagac--cataatcccttttcggtttaatgt 26341717  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||| ||| |||||||||||||| | ||||||||||   || || ||||||  || |||||||| |||| ||||||||||||| ||||| ||||| |    
T  26341716 cccttcggaattaagaatggtcttaa-aatatagtccctgtgataatatatgtcccttcagaataaagaatacttttaagatcatagtccctatttggaa 26341618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 10498447 - 10498383
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||||||||||||| |||||| | ||||||||||||| ||| |||||||||||||||    
T  10498447 atatattcttcttcaattcttgtagaagttatatgttagaatggtggtaacaccatatttgagtg 10498383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 10503476 - 10503412
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||||||||||||| |||||| | ||||||||||||| ||| |||||||||||||||    
T  10503476 atatattcttcttcaattcttgtagaagttatatgttagaatggtggtaacaccatatttgagtg 10503412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 511
Target Start/End: Complemental strand, 4580062 - 4579819
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||  ||||||| ||| ||||||||||||  || |||||||| |||||| ||||  |||  ||| ||||||||| ||||||| |||||||||||     
T  4580062 tgtccctttggaattaagagtgttcttaagacca--taatcccttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtcccttcg 4579965  T
Q  368 attattt-atgtctttttagaataaataatattttaagatcataatccctt--tttggtataataaaaatgatcttaaacatatatattcttcttc-aat 463  Q
    || |||| | |||  ||   |||||||||||||||||||||||||||||||    | | | | ||| |||||||||||  | ||| |||||||||| | |    
T  4579964 ataattttaagtcccttcgaaataaataatattttaagatcataatcccttcccatcgaaaattaagaatgatcttaa--aaataaattcttcttcgatt 4579867  T
Q  464 tcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    | || ||||||| ||||||||||||||| |||||| ||||||| ||||    
T  4579866 ttttcaagaagttagatgttagaatggtggtagcatcatatttaagtg 4579819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 427
Target Start/End: Original strand, 42626120 - 42626277
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| |||| || ||| ||||||||||||  ||||||||||| ||| || ||||||| || ||| |||||||||||||| |  ||||||||||||    
T  42626120 tgtcccttcggaatcaagagtgttcttaagacca--tagtcccttttcggtttaatgtccctccggaattaagaatggtcttaa-aacatagtcccttca 42626216  T
Q  368 attatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| ||||    
T  42626217 ataatatatgtcccttcagaataaagagtacttttaagatcatattccctatttggaataa 42626277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 13344945 - 13344884
Alignment:
Q  450 tattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||| |||||||||||||| |||||| ||||||||||||||| ||| ||| |||||||||||    
T  13344945 tatttttcttcaattcttgtagaagttagatgttagaatggtggtaacactatatttgagtg 13344884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 47102121 - 47102015
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| ||| |||||||| ||||||| ||| |||||||||||| |||||||||| | | ||||||||    
T  47102121 cgacttgtgttgacaagtccttctcctttttctactcccttccgtcccttcggaattaagagtgttcttaagaccatatagtcccttgtcgatatattgt 47102022  T
Q  326 cccttcg 332  Q
    |||||||    
T  47102021 cccttcg 47102015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 4930764 - 4930689
Alignment:
Q  290 ttcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||||||||  |||||||||||| ||| || |||||||||||||| |||||||||||||| |  |||||||||||    
T  4930764 ttcttaagacca--tagtccctttttcggtttaatgtcccttcgaaattaagaatggtcttaaaaacatagtcccttc 4930689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 13337057 - 13337016
Alignment:
Q  450 tattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  13337057 tattcttcttcaattcttgtagaagttagatgttagaatggt 13337016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 12799953 - 12799868
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    ||||||||||||  |||||| ||| || |||||||||  |||||||||||| ||| || |||||||||||||| ||||||||||||||    
T  12799953 ttctgtcccttcgaaattaagagtgttattaagacca--tagtccctttttcggtttaatgtcccttcgaaattaagaatggtcttaa 12799868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 26286672 - 26286756
Alignment:
Q  266 ttctgtcccttctgaattaaa-gtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    |||||||||||| ||| |||| || ||||||||||||||  || | |||| |||||| |||||||||| ||| ||||||||||||||    
T  26286672 ttctgtcccttcggaactaaaagttttcttaagaccaca--gttcattttcggtataatgtcccttcggaattaagaatggtcttaa 26286756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 427
Target Start/End: Complemental strand, 8268826 - 8268700
Alignment:
Q  303 atagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttt 400  Q
    ||||||||||||| ||| || |||||||||| ||| |||||||||||||| |  ||||||| ||| || || ||||||  ||  ||||||| | || |||    
T  8268826 atagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccattcgataatatatgtcccttcggaataaagagtacttt 8268727  T
Q  401 taagatcataatccctttttggtataa 427  Q
    |||||||||| ||||| ||||| ||||    
T  8268726 taagatcatagtccctatttggaataa 8268700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 2595390 - 2595305
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    ||||||||||||  |||||| ||| |||||||||||   |||||||||||| ||| || |||||||||| ||| ||||||||||||||    
T  2595390 ttctgtcccttcgaaattaagagtgttcttaagaccg--tagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaa 2595305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 228 - 531
Target Start/End: Original strand, 12044647 - 12044954
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||| ||  ||||||| ||| |||||||||||| |||||||||| | | ||||||||    
T  12044647 cgacttgtgttgacaagtccttctcctttttctactcctttctgtccttttggaattaagagtgttcttaagaccatatagtcccttgtcgatatattgt 12044746  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||    
T  12044747 cccttcggaatcaagaatggtcataagagcatagtcccttcaattatttatgtccttttagaataaagaatattttaagatcatagtcccttttcggtat 12044846  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  12044847 aataagaatgatcttaaacatatatattcttcttcaattcatggagaagttagatgttagaatggtcgtaacaccatatttgagtggttgaaataccata 12044946  T
Q  524 ctgatatt 531  Q
     |||||||    
T  12044947 ttgatatt 12044954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 228 - 531
Target Start/End: Complemental strand, 3666497 - 3666190
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       | ||||| |||||||||  ||||||| ||| ||||||| |||| ||||||| || | ||| |||| |    
T  3666497 cgacttgtgttgacaagtccttctcctttttctattcctttctgtccctttcgaattaagagtgttcttaaaaccatatagtcctttgtcggtctattat 3666398  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||| | |||||||||||||||| |||| ||||||| |||||||||||| |||| |||||||||||||||||||||| |||||| ||  ||||  ||||    
T  3666397 ccctttggaatcaagaatggtcttgagagcatagtcctttcaattatttacgtctctttagaataaataatattttaatatcatagtcttttttcagtat 3666298  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  3666297 aataagaatgatcttaaacatatatattcttcttccattcttggagaagttagatgttagaatggttgtagcaccatatttgagtggttgaaataccata 3666198  T
Q  524 ctgatatt 531  Q
     |||||||    
T  3666197 ttgatatt 3666190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 228 - 531
Target Start/End: Original strand, 32461056 - 32461363
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||||||| |||||||||||||||| |||||||||| | ||| |||||     
T  32461056 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaattaagagtattcttaagaccatatagtcccttgtcggtttattga 32461155  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatatttt-aagatcataatccctttttggta 424  Q
     |||||| |||||| |||||||||||||| ||||||||||| || ||| || ||| ||  ||| ||||||| |||| ||||||||| ||||||||  |||    
T  32461156 tccttcggaatcaataatggtcttaagagcatagtcccttcgataattcat-tctcttcggaacaaataatgttttaaagatcatagtcccttttcagta 32461254  T
Q  425 taataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccat 522  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| || |  |||||||||||    
T  32461255 taataagaatgatcttaaacatatatattcttcttcaattcttgaataagttagatgttagaatggtcgtaacaccatattttagcggttgaaataccat 32461354  T
Q  523 actgatatt 531  Q
    | |||||||    
T  32461355 attgatatt 32461363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 228 - 531
Target Start/End: Original strand, 6154922 - 6155228
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttct-gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       |||| || | || ||||| ||||||| ||| |||||||||||| |||||||||| | ||| |||||     
T  6154922 cgacttgtgttgacaagtccttctcctttttctactcttttttgttccttcggaattaagagtgttcttaagaccatatagtcccttgtcggtttattga 6155021  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
     |||||  |||||| |||||||||||||| ||||||||||| || | | || ||| ||  ||||||||||| ||||||||||||| |||||||| |||||    
T  6155022 tccttcagaatcaataatggtcttaagagcatagtcccttcgataaatcat-tctcttcggaataaataatgttttaagatcatagtcccttttcggtat 6155120  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  6155121 aataagaatgatcttaaacatatatattcttcttcaattcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggttgaaataccata 6155220  T
Q  524 ctgatatt 531  Q
     |||||||    
T  6155221 ttgatatt 6155228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 228 - 511
Target Start/End: Original strand, 36937023 - 36937305
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||| |||||||||||| ||||||| |||| |||||||||  ||||||||||||| ||| || |||    
T  36937023 cgacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtaatcttaagac--catagtcccttttcggtttaatgt 36937120  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| |||||||||||||| || ||||||||||| || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  36937121 cccttcggaattaagaatggtcttaacagcatagtcccttcgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 36937219  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  36937220 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 36937305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 228 - 511
Target Start/End: Original strand, 36941777 - 36942059
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||| |||||||||||| ||||||| ||| |||||||||   ||||||||||||| ||| || |||    
T  36941777 cgacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaaga--tcatagtcccttttcggtttaatgt 36941874  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| |||||||||||||| || ||||||||||| || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  36941875 cccttcggaattaagaatggtcttaacagcatagtcccttcgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 36941973  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  36941974 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 36942059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 557278 - 556996
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||||| |||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||    
T  557278 cgacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgt 557181  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| ||||||||||||||||  ||||||||||  || | | || ||| ||  ||||||||||| |||||| |||||| |||||||| |||||    
T  557180 cccttcggaattaagaatggtcttaagaacatagtccctttgataaatcat-tctcttcggaataaataatgttttaatatcatagtcccttttcggtat 557082  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| |||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||    
T  557081 aataagaatgatcttaaacatatatattcttcttcaattcatggagaagttggatgttagaatggtcgtagcaccatatttgagtg 556996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 562050 - 561768
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||||| |||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||    
T  562050 cgacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgt 561953  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| ||||||||||||||||  ||||||||||  || | | || ||| ||  ||||||||||| |||||| |||||| |||||||| |||||    
T  561952 cccttcggaattaagaatggtcttaagaacatagtccctttgataaatcat-tctcttcggaataaataatgttttaatatcatagtcccttttcggtat 561854  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| |||||||||||||||||||||||||||||||||| || ||||||  ||||| ||||||||||||||||||||||||||||    
T  561853 aataagaatgatcttaaacatatatattcttcttcaattcatggagaagttggatgtcagaatggtcgtagcaccatatttgagtg 561768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 229 - 511
Target Start/End: Complemental strand, 41997245 - 41996961
Alignment:
Q  229 gacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtc 326  Q
    ||||||||||||| |||||||||||       ||||||| |||||||||| ||||||| ||| |||||||||||| |||||||||| | ||| |||||      
T  41997245 gacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagaccatatagtcccttgtcggtttattgat 41997146  T
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatatttt-aagatcataatccctttttggtat 425  Q
    | |||| |||||| |||||||||||||  ||||||||||  || ||| || |||  |  ||||||||||| |||| ||||||||| || ||||| | |||    
T  41997145 cattcggaatcaataatggtcttaagaacatagtccctttgataattcat-tctcgtcggaataaataatgtttttaagatcatagtcgcttttcgatat 41997047  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  41997046 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 41996961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 229 - 511
Target Start/End: Complemental strand, 42002014 - 42001730
Alignment:
Q  229 gacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtc 326  Q
    ||||||||||||| |||||||||||       ||||||| |||||||||| ||||||| ||| |||||||||||| |||||||||| | ||| |||||      
T  42002014 gacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagaccatatagtcccttgtcggtttattgat 42001915  T
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatatttt-aagatcataatccctttttggtat 425  Q
    | |||| |||||| |||||||||||||  ||||||||||  || ||| || |||  |  ||||||||||| |||| ||||||||| || ||||| | |||    
T  42001914 cattcggaatcaataatggtcttaagaacatagtccctttgataattcat-tctcgtcggaataaataatgtttttaagatcatagtcgcttttcgatat 42001816  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  42001815 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 42001730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 228 - 491
Target Start/End: Complemental strand, 31732119 - 31731857
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||| ||||||       ||||||| |||||||||| ||||||| ||| ||||||||||||  |||||| |   |||| |||| |    
T  31732119 cgacttgtgttgacaagtcgttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagacca--tagtccatcgctggtttattat 31732022  T
Q  326 cccttc-gaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggt 423  Q
    || ||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| |||    
T  31732021 cctttcagaaat-aagaatggtcttaagagcatagccccttcaattatttatgtctctttagaataaataatattttaagatcatggtccctttttcggt 31731923  T
Q  424 ataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||||  |||||||||  |||||||||||||||||||||||| ||||||  ||||||||||||||    
T  31731922 ataataaaggtgatcttaa--atatatattcttcttcaattcttggagaagttggatgttagaatggt 31731857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 266 - 491
Target Start/End: Original strand, 13301042 - 13301263
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| |  | ||| |||| ||| |||| ||  ||||||||||||||||| |||||||||    
T  13301042 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtccct 13301139  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaat 463  Q
    ||||||||||  |||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||  ||||||||||||||||||    
T  13301140 tcaattattt--gtctctttagaataaataatattttaagatcatggtccctttttcggtataataaagatgatcttaaa--tatatattcttcttcaat 13301235  T
Q  464 tcttgaagaagtaagatgttagaatggt 491  Q
    ||||| ||||||  ||||||||||||||    
T  13301236 tcttggagaagttggatgttagaatggt 13301263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 338 - 491
Target Start/End: Original strand, 21323598 - 21323750
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatga 436  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||  || |||||| ||||||||||  ||||    
T  21323598 aagaatggtctttagagcatagtccgttcaattatttatgtctctttagaataaatcatattttaagatcatggtctctttttcggtataataatgatga 21323697  T
Q  437 tcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||  |||||||||||||||||||||||| |||||| |||||||||||||||    
T  21323698 tcttaa--atatatattcttcttcaattcttggagaagttagatgttagaatggt 21323750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 346 - 531
Target Start/End: Original strand, 23977218 - 23977406
Alignment:
Q  346 tcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaa--a 443  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  | | |||| |||| ||||| |||||||||||  |    
T  23977218 tcttaagagcatagtcccttcaattgtttatgtctctttagaataaataatattttaagatcatggt-ctttttcggtacaataagaatgatcttaaaca 23977316  T
Q  444 catatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    ||||||| ||||||||| |||| |  |||||| | |||||||||||||||||||||||||||||||||  |||| ||||||| |||||||    
T  23977317 catatattttcttcttctattcatagagaagttaaatgttagaatggtcgtagcaccatatttgagtggttgaagtaccatattgatatt 23977406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 488
Target Start/End: Complemental strand, 9911600 - 9911468
Alignment:
Q  356 atagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttt-tggtataataaaaatgatcttaaacatatatattc 454  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||  |||||| || |||||  |||||||| | |||||||||||| | ||||||||    
T  9911600 atagtcccttcaattatttatgtctcttcagaataaataata-tttataatcatagtctcttttccggtataattataatgatcttaaaaaaatatattc 9911502  T
Q  455 ttcttcaattcttgaagaagtaagatgttagaat 488  Q
    |||||||||||||| ||||||  || ||||||||    
T  9911501 ttcttcaattcttggagaagttcgacgttagaat 9911468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 1429732 - 1429799
Alignment:
Q  341 aatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatca 408  Q
    |||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  1429732 aatggtcttaagagcatagtcccttcaattatttatgtctcttcagaataaataatatattaagatca 1429799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 422
Target Start/End: Original strand, 29167461 - 29167655
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||||||||| |       ||||||| |||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||    
T  29167461 cgacttgtgttgacaagtccttcttctttttctactcctttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgt 29167558  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    ||||||| ||| |||||||||||||| |  || |||||||| || || ||||||  || |||||||| | || ||||||||||||| ||||| |||||    
T  29167559 cccttcggaattaagaatggtcttaa-aacattgtcccttcgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttgg 29167655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 511
Target Start/End: Complemental strand, 39518965 - 39518710
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatat-tgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| |||| || ||| ||||||||||||  |||||||| || ||| ||  |||||||||| ||| |||||||||||||||   ||||||||    
T  39518965 ttctgtcccttcggaataaagagtgttcttaagacca--tagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtccc 39518868  T
Q  364 ttcaat-tatttatgtctttttagaataaataatattttaagatcataatccctttttggtataat----------aaa----aatgatcttaaacatat 448  Q
    ||| || | |||||||| ||   |||||||||||| |||||||||||| |||||||| ||||||||          |||    ||||||||||||   ||    
T  39518867 ttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtcccttttcggtataatgtcccttcaaaaatatgaatgatcttaaa---at 39518772  T
Q  449 atattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||| |||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  39518771 atattcttcttcgattcttgaagaagttagacgttagaatggt-gtaaaaccatatttgagtg 39518710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 511
Target Start/End: Complemental strand, 39523604 - 39523349
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatat-tgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| |||| || ||| ||||||||||||  |||||||| || ||| ||  |||||||||| ||| |||||||||||||||   ||||||||    
T  39523604 ttctgtcccttcggaataaagagtgttcttaagacca--tagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtccc 39523507  T
Q  364 ttcaat-tatttatgtctttttagaataaataatattttaagatcataatccctttttggtataat----------aaa----aatgatcttaaacatat 448  Q
    ||| || | |||||||| ||   |||||||||||| |||||||||||| |||||||| ||||||||          |||    ||||||||||||   ||    
T  39523506 ttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtcccttttcggtataatgtcccttcaaaaatatgaatgatcttaaa---at 39523411  T
Q  449 atattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||| |||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  39523410 atattcttcttcgattcttgaagaagttagacgttagaatggt-gtaaaaccatatttgagtg 39523349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 26667841 - 26667681
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  26667841 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccct 26667745  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    |  || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| ||||    
T  26667744 ttgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttggaataa 26667681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 26939438 - 26939278
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  26939438 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccct 26939342  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    |  || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| ||||    
T  26939341 ttgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttggaataa 26939278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 40148464 - 40148304
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||  ||| |||||||||||||| |  |||||||||    
T  40148464 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa-aacatagtccct 40148368  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || || ||||||  || |||||||| | || ||||||||||||  ||||| ||||| ||||    
T  40148367 tcgataatatatgtcccttcagaataaaaagtacttttaagatcattgtccctatttggaataa 40148304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 427
Target Start/End: Complemental strand, 36424245 - 36424046
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||| ||||||       ||||| |||||||||||| ||||||| | | ||||||||||  ||||||||||||| ||| || |||    
T  36424245 cgacttgtgttgacaagtcattctcctttttctactcctttctgtcccttcggaattaagactgttcttaagac--catagtcccttttcggtttaatgt 36424148  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||| ||| |||||||||||||| |  ||| || |||| || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| |    
T  36424147 cccttcggaattaagaatggtcttaa-aacataatctcttcgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttggaa 36424049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 427
Target Start/End: Original strand, 37549640 - 37549839
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||  ||| ||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  37549640 cgacttgtgttgacaagtccttctcctttttctactcctttctgtccctttggaaataagagtgttcttaagac--catagtcccttttcggtttaatgt 37549737  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||| ||| |||||||||||| | |  ||||||| ||| || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| |    
T  37549738 cccttcggaattaagaatggtcttga-aacatagtccattcgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttggaa 37549836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 366
Target Start/End: Complemental strand, 7452360 - 7452222
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||| ||| |||||||||||       ||||| |||||||||||| ||| ||| ||| ||||||||||  ||| ||||||||| ||| || |||    
T  7452360 cgacttgtgtggacaagtccttctcctttttctactcctttctgtcccttcggaaataagagttttcttaagac--cattgtcccttttcggtttaatgt 7452263  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||| ||| |||||||||||||| |  |||||||||||    
T  7452262 cccttcggaattaagaatggtcttaaaaacatagtcccttc 7452222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 9726282 - 9726442
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| |||||||||||   ||||||||||| ||| || |||||||||  ||| |||||||||||||| |  |||||||||    
T  9726282 ttctgtcccttcggaattaagagtgttcttaagaccg--tagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa-aacatagtccct 9726378  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || || ||||||  ||  ||||||| | || ||||||||||||| ||||| ||||| ||||    
T  9726379 tcgataatatatgtcccttcggaataaagagtacttttaagatcatagtccctatttggaataa 9726442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 37248329 - 37248486
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| || |||| ||| ||||||||||||  |||||||||||| ||| || |||||||||  ||| ||||||| |||||| |  ||||||||    
T  37248329 ttctgtcccttcggatttaagagtgttcttaagacca--tagtccctttttcggtttaatgtcccttcagaattaagaatgatcttaaaaacatagtccc 37248426  T
Q  364 ttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    ||| || || ||||||  || |||||||| | || ||||||||||||| ||||| |||||    
T  37248427 ttcgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttgg 37248486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 36429278 - 36429194
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| | | || |||||||||| ||| ||||||||||||||    
T  36429278 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcgttttaatgtcccttcggaattaagaatggtcttaa 36429194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 349
Target Start/End: Original strand, 37652438 - 37652559
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||  ||| ||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  37652438 cgacttgtgttgacaagtccttctcctttttctactcctttctgtccctttggaaataagagtgttcttaagac--catagtcccttttcggtttaatgt 37652535  T
Q  326 cccttcgaaatcaagaatggtctt 349  Q
    ||||||| ||| ||||||||||||    
T  37652536 cccttcggaattaagaatggtctt 37652559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 418
Target Start/End: Complemental strand, 23688620 - 23688511
Alignment:
Q  309 cctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatca 408  Q
    |||||| |||||| ||||| | || ||| ||||||||||||||||| ||| ||| ||| || || ||||||  ||  ||||||| | |||||||||||||    
T  23688620 ccttttcggtataatgtccgtccggaattaagaatggtcttaagagcatattcctttcgatgatatatgtcccttcggaataaagactattttaagatca 23688521  T
Q  409 taatcccttt 418  Q
     |||||||||    
T  23688520 caatcccttt 23688511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 3666186 - 3666145
Alignment:
Q  470 agaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  3666186 agaagttagatgttagaatggtggtaacaccatatttgagtg 3666145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 531
Target Start/End: Complemental strand, 15468870 - 15468807
Alignment:
Q  470 agaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    |||||||||||||||||||||| || ||| ||||||||| ||  || ||||||| |||||||||    
T  15468870 agaagtaagatgttagaatggtggttgcatcatatttgaatggttgtaataccacactgatatt 15468807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 4e-92; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 228 - 531
Target Start/End: Complemental strand, 47575244 - 47574937
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       |||| || ||||||||||  |||||| ||| |||||||||||| |||||||||| | | ||||||||    
T  47575244 cgacttgtgttgacaagtccttctcctttttctactcatttctgtcccttcgaaattaagagtgttcttaagaccatatagtcccttgtcgatatattgt 47575145  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||    
T  47575144 cccttcagaatcaagaatggtcttaagagcatagtcccttcaattatttatgtcattttagaataaagaatattttaagatcatagtcccttttcggtat 47575045  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  47575044 aataagaatgatcttaaacatatatattcttcttcaattcatggagaagttagatgttagaatggtcgtaacaccatatttgagtggttgaaataccata 47574945  T
Q  524 ctgatatt 531  Q
     |||||||    
T  47574944 ttgatatt 47574937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 270 - 531
Target Start/End: Original strand, 13521540 - 13521803
Alignment:
Q  270 gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaa 368  Q
    |||||||| ||||||| ||| |||||||||||| |||||||||| | | |||||| |||||||| ||||||||||||||||||||| |||| |||| |||    
T  13521540 gtcccttcggaattaagagtgttcttaagaccatatagtcccttgtagatatattttcccttcggaatcaagaatggtcttaagagcatagcccct-caa 13521638  T
Q  369 ttatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttg 468  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13521639 ttatttatgtctttttagaataaataatattttaagatcatagtcccttttcggtataataagaatggtcttaaacatatatattcttcttcaattcttg 13521738  T
Q  469 aagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    ||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||    
T  13521739 aagaagttagatgttagaatggtcgtaacaccatatttgagtggttgaaataccatattgatatt 13521803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 228 - 529
Target Start/End: Complemental strand, 41817364 - 41817064
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||| ||       ||||| |||||||||||| ||||||| ||| ||||||||||  |||||||| | || ||| |||| |    
T  41817364 cgacttgtgttgacaagtccttcccctttttctactcctttctgtcccttcggaattaagagtgttcttaagac--catagtccatcttcggtttattat 41817267  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    || |||||||  ||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||  |||  |||     
T  41817266 cctttcgaaaataagaatggtcttaagagcatagt-ccttcaattgtttatgtctctttagaataaataatattttaagatcatagtcc--tttcagtac 41817170  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||||| ||||||||||||||||||||||||||||| |||| || ||||||  ||| |||||||||| |||||||||||||||||||  |||| |||||||    
T  41817169 aataagaatgatcttaaacatatatattcttcttctattcatggagaagtttgatattagaatggttgtagcaccatatttgagtggttgaagtaccata 41817070  T
Q  524 ctgata 529  Q
     |||||    
T  41817069 ttgata 41817064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 228 - 489
Target Start/End: Original strand, 3997574 - 3997836
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||| ||||||       ||||||| |||||||||| ||||||| ||| |||||||||| |  |||||| |  | ||| |||| |    
T  3997574 cgacttgtgttgacaagtcgttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagacta--tagtccatcatcggtttattat 3997671  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttt---tagaataaataatattttaagatcataatccctttttgg 422  Q
    || |||| ||  ||||||||||||||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||  |||||||| ||    
T  3997672 cctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtctcttaattagaataaataatattttaagatcatggtcccttttcgg 3997771  T
Q  423 tataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatg 489  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||| ||||||  ||||||||||||    
T  3997772 tataataaagatgatcttaa--atatatattcttcttcaattcttggagaagttggatgttagaatg 3997836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 316 - 491
Target Start/End: Original strand, 42316207 - 42316379
Alignment:
Q  316 ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccc 415  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  || |  ||||||||||||||||||||||| ||||    
T  42316207 ggtataatgtcccttcgaaattaagaatggtcttaagagtatagtccgttcaattatttatgtcccttcatgataaataatattttaagatcatagtccc 42316306  T
Q  416 tttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    |||| |||||||||| |||||||||||  | |||||||||||||| | ||||||||| || | |||||||||||||    
T  42316307 ttttcggtataataagaatgatcttaa--aaatatattcttcttc-actcttgaagatgttatatgttagaatggt 42316379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 345 - 511
Target Start/End: Complemental strand, 40840799 - 40840635
Alignment:
Q  345 gtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaac 444  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||| |||| |||||||||| |||||| || |||    
T  40840799 gtcttaagagcatagtcccttcaattatttatgtctctttagaataaataatattttaggatcgtagtccattttcggtataataagaatgat-tttaac 40840701  T
Q  445 atatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    | ||||||| |||||||||||||  |||||| ||||||||||||||| |||||| ||||||||||||    
T  40840700 a-atatatttttcttcaattcttagagaagttagatgttagaatggttgtagcatcatatttgagtg 40840635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 266 - 489
Target Start/End: Original strand, 7902662 - 7902885
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  || ||| |  ||||| |||| ||| || | ||  ||||||||||||||||| | |||||||    
T  7902662 ttctgtcccttcggaattaagagtgttcttaagacca--taatccatcgttggtttattatccttttggaaataagaatggtcttaagagcacagtccct 7902759  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaa---aatgatcttaaacatatatattcttcttca 461  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||  |||||||| |||||||||||    ||||||||||  ||||| |||||||||||    
T  7902760 tcaattatttacgtctctttagaataaataatattttaagatcatggtcccttttcggtataataaagatgatgatcttaa--atataaattcttcttca 7902857  T
Q  462 attcttgaagaagtaagatgttagaatg 489  Q
    ||||||| ||||||  ||||||||||||    
T  7902858 attcttggagaagttggatgttagaatg 7902885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 338 - 491
Target Start/End: Complemental strand, 34560894 - 34560740
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcat--aatccct-ttttggtataataaaaat 434  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||| ||| ||||||||||| ||    
T  34560894 aagaatggtcttaagagcatagtcccttcaattatttatgtctctttagaataaataatattttaagatcatggggtccctctttcggtataataaagat 34560795  T
Q  435 gatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||||  |||||||||||||||||||||||| |||| |   |||||||||||||    
T  34560794 gatcttaa--atatatattcttcttcaattcttggagaaattgaatgttagaatggt 34560740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 338 - 511
Target Start/End: Complemental strand, 39320036 - 39319868
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatga 436  Q
    ||||||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||  ||||||||| |||||||| | |||||    
T  39320036 aagaatggtcttaagagcatagtcccttcaattatttatgtctcgttagaa-aaataatattttaagatcatggtccctttttcggtataattagaatga 39319938  T
Q  437 tcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||| | |||      |||| ||||| ||||||||| ||| ||||||||||| ||| |||||||||||||||    
T  39319937 tcttaaaaaaata-----ctcttgaattcgtgaagaagttagacgttagaatggtagtaacaccatatttgagtg 39319868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 43477635 - 43477757
Alignment:
Q  344 ggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaa 443  Q
    ||||||||||| || | |||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |||| |||||| ||| |||||||||||     
T  43477635 ggtcttaagagcatggccccttcaattatttatgtccatttagaataaataatattttaagatcatagtccattttcggtatattaagaatgatcttaa- 43477733  T
Q  444 catatatattcttcttcaattcttg 468  Q
     | ||||||||||||||||||||||    
T  43477734 -aaatatattcttcttcaattcttg 43477757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 426 - 531
Target Start/End: Original strand, 31298097 - 31298204
Alignment:
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||||| |||||||||||||||||||||||||| || |||| || |||||| |||||||||||||||||||||||||||||||||||  |||| |||||||    
T  31298097 aataagaatgatcttaaacatatatattcttcatctattcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggttgaagtaccata 31298196  T
Q  524 ctgatatt 531  Q
     |||||||    
T  31298197 ttgatatt 31298204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 39216631 - 39216795
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    ||||||||||||  ||| || ||| ||||||||||||  |||||||| || |||||| |||||||||||||| ||||| |||||| |||| |||||||||    
T  39216631 ttctgtcccttcaaaatcaagagtgttcttaagacca--tagtccctattcggtataatgtcccttcgaaattaagaaaggtcttgagagcatagtccct 39216728  T
Q  365 tcaat-tatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataata 429  Q
    ||||| | ||||||||  ||| |||||||||||||||||| |||||| ||| ||||| |||||||||    
T  39216729 tcaatatttttatgtccctttggaataaataatattttaaaatcatagtccatttttcggtataata 39216795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 321 - 498
Target Start/End: Original strand, 31786035 - 31786208
Alignment:
Q  321 attgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt 420  Q
    |||||||  ||||||| || ||||||||| |||| |||||||||| ||||||||||||| ||| | |||||||||||||||||||| |||||| ||||||    
T  31786035 attgtcctgtcgaaattaataatggtcttcagagcatagtccctttaattatttatgtcctttcaaaataaataatattttaagattataatcacttttt 31786134  T
Q  421 -ggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagca 498  Q
       |||||||| || |||||| || |||||     ||||||||||||||||||| | ||||||| | ||||| ||||||    
T  31786135 caatataataagaacgatcttgaaaatata-----ttcttcaattcttgaagaatttagatgttcggatggtagtagca 31786208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 350 - 531
Target Start/End: Original strand, 8661071 - 8661252
Alignment:
Q  350 aagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatata 449  Q
    ||||| ||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||  | ||||  |||||||||| |||||||||||  | | |    
T  8661071 aagagcatagtccgttcaattatttatgtttccttagaataaataatattttaagatcatagcctctttccggtataataagaatgatcttaa--aaaca 8661168  T
Q  450 tattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    |||| ||||||||||||||| ||  | | |||||||||||||  || || |||| |||||||  ||||||| |||| |||||||    
T  8661169 tatttttcttcaattcttgatgatcttatatgttagaatggtgataacatcatagttgagtggttgaaatatcatattgatatt 8661252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 422
Target Start/End: Complemental strand, 8694320 - 8694126
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||||||| ||| ||||||||||  ||||||||||||||| | || |||    
T  8694320 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagac--catagtccctttttgatttaatgt 8694223  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    ||||| | ||| |||||||||||||| |  ||||||| ||| || || ||||||  ||||||||||| | || ||||||||||||| ||||| |||||    
T  8694222 ccctttggaattaagaatggtcttaa-aacatagtccattcgataatatatgtccctttagaataaagagtacttttaagatcatagtccctatttgg 8694126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 19540708 - 19540869
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  19540708 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 19540805  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || || ||||||  ||  ||||||| | || ||||||||||||| ||||| ||||| ||||    
T  19540806 tcgataatatatgtcccttcggaataaagagtacttttaagatcatagtccctatttggaataa 19540869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 420
Target Start/End: Complemental strand, 8536770 - 8536651
Alignment:
Q  302 catagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaat-tatttatgtctttttagaataaataatattt 400  Q
    |||||| ||||||||||||| ||||| |||  ||| ||||||||| ||||||| ||| || |||| || | |||||||| ||| ||||||||||||||||    
T  8536770 catagtacctttttggtataatgtccattcagaattaagaatggttttaagagcataatctcttcgatatttttatgtcctttaagaataaataatattt 8536671  T
Q  401 taagatcataatcccttttt 420  Q
    |||||||||| |||| ||||    
T  8536670 taagatcatagtcccatttt 8536651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 427
Target Start/End: Complemental strand, 31766478 - 31766279
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||| ||| ||||||| ||||||||||||||  |||||||||||||  || || |||    
T  31766478 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcctttcggaattaagagtattcttaagac--catagtcccttttcagtttaatgt 31766381  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||| ||| |||||||||||||| |  ||||||||| | || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| |    
T  31766380 cccttcggaattaagaatggtcttaa-aacatagtccctgcgataatatatgtcccttcagaataaaaagtacttttaagatcatagtccctatttggaa 31766282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 5270912 - 5271050
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||| ||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  5270912 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaaataagagtgttcttaagac--catagtcccttttcggtttaatgt 5271009  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||| ||| |||||||||||||| |  |||||||||||    
T  5271010 cccttcggaattaagaatggtcttaaaaacatagtcccttc 5271050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 511
Target Start/End: Complemental strand, 12875023 - 12874838
Alignment:
Q  340 gaatggtcttaagagtatagtcccttcaat-tatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataat--------- 428  Q
    ||||| ||||||||||||||||||||| || | ||| ||||  ||   |||||||||||||||||||||||||||||||||| ||||||||             
T  12875023 gaatgttcttaagagtatagtcccttcgatatttttgtgtcccttcgaaataaataatattttaagatcataatccctttttcggtataatgttcctttg 12874924  T
Q  429 ------aaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
          || ||||||||||||   ||| |||||| ||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  12874923 aaaattaagaatgatcttaaa---atacattcttgttccattcttggagaagttagatgttagaatggtggtagcaccatatttgagtg 12874838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 266 - 430
Target Start/End: Complemental strand, 16421607 - 16421443
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||| ||| ||||||| ||| ||||||||||||  ||||||||| | ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  16421607 ttctgtccattcggaattaagagtgttcttaagacca--tagtcccttctcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 16421510  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataataa 430  Q
    || || || || |||  ||| ||||||| | || | ||||||||||| ||||||||||| |||||||    
T  16421509 tcgataatataagtccctttggaataaagagtactattaagatcatagtccctttttggaataataa 16421443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 427
Target Start/End: Complemental strand, 19107176 - 19107017
Alignment:
Q  267 tctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccctt 365  Q
    ||||||||||| || |||| ||||||||||||||||  |||| |||||| ||| || |||||||||||||| |||||||||||||| |  ||||||||||    
T  19107176 tctgtcccttcggacttaagagtattcttaagacca--tagttccttttcggtttaatgtcccttcgaaattaagaatggtcttaa-aacatagtccctt 19107080  T
Q  366 caattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    | || || ||||||| ||  ||||||| | || |||||||||||||  |||| ||||| ||||    
T  19107079 cgataatatatgtctcttcggaataaagagtacttttaagatcatagcccctatttggaataa 19107017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 42758479 - 42758553
Alignment:
Q  451 attcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    |||||||||| |||||| ||||||| ||||||||||||||| ||||| |||||||||||||  ||||||||||||    
T  42758479 attcttcttcgattcttcaagaagttagatgttagaatggtggtagcgccatatttgagtgattgaaataccata 42758553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 427
Target Start/End: Original strand, 5927706 - 5927905
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaaa-gtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       |||| || |||||| ||| |||||||| || ||||||||||||  ||||||||||| ||| || |||    
T  5927706 cgacttgtgttgacaagtccttctcctttttctactcttttctgtccattcggaattaaaagtgttcttaagacca--tagtcccttttcggtttaatgt 5927803  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||| ||| |||||||||||||| |  ||||||||||| || || ||||||  || | |||||| | || ||||||||||||| ||||| ||||| |    
T  5927804 cccttcggaattaagaatggtcttaa-aacatagtcccttcgataatatatgtcccttcaaaataaagagtacttttaagatcatagtccctatttggaa 5927902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 512
Target Start/End: Complemental strand, 12878615 - 12878538
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtgt 512  Q
    ||||||||||||   ||| |||||||||||||||||| |||||| | ||||||||||||| || |||||||||||||||||    
T  12878615 aatgatcttaaa---atacattcttcttcaattcttggagaagttacatgttagaatggtggtggcaccatatttgagtgt 12878538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 428
Target Start/End: Complemental strand, 19906806 - 19906644
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    ||||||||||||  |||||| ||| ||||||||| ||  ||||||||||||||| || ||| |||||| ||| |||||||  ||||||   |||||||||    
T  19906806 ttctgtcccttcgaaattaatagtgttcttaagatca--tagtccctttttggtttaatgttccttcggaattaagaatgaccttaagttcatagtccct 19906709  T
Q  365 tcaat-tatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataat 428  Q
    || || | |||| ||| ||| | |||||||||||||||||||||||| ||||||||| ||||||||    
T  19906708 tcgatatttttaagtcctttga-aataaataatattttaagatcatagtccctttttcggtataat 19906644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 48276368 - 48276443
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||||||||   |||||||||||||| |||||||||||||| ||||||||||||||| |||  ||||||||||||||    
T  48276368 aatgatcttaaa---atatattcttcttcgattcttgaagaagttagatgttagaatggt-gtaaaaccatatttgagtg 48276443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 51698487 - 51698375
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| |||||||||| |  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  51698487 ttctgtcccttcggaattaagagtgttcttaagacaa--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 51698390  T
Q  365 tcaattatttatgtc 379  Q
    || || || ||||||    
T  51698389 tcgataatatatgtc 51698375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 33462893 - 33463054
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||| ||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||  ||| |||||| ||||||||   ||| |||||    
T  33462893 ttctgttccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcagaattaagaatagtcttaagttcataatccct 33462990  T
Q  365 tcaat-tatttatgtctttttagaataaataatattttaagatcataatccctttttggtataat 428  Q
    || || | |||||||| ||  | ||||||||||| |||||||||||| ||||||||  |||||||    
T  33462991 tcgatatttttatgtccttcga-aataaataataatttaagatcatagtcccttttcagtataat 33463054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 37259393 - 37259546
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| || |||| ||| ||||||||||||  ||||| ||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  37259393 ttctgtcccttcggatttaagagtgttcttaagacca--tagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 37259490  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    || || |   |||||  || |||||||| |||| ||||||||||||| ||||| |||||    
T  37259491 tcgataa---atgtcccttcagaataaagaatatttttaagatcatagtccctatttgg 37259546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 420
Target Start/End: Complemental strand, 2820328 - 2820208
Alignment:
Q  302 catagtccctttttggt-atattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-tt 399  Q
    ||||||| ||||| ||| ||| |||| ||||||||| ||||||||||||||| | |||||||||||||| || || |||  ||| ||||||| | || ||    
T  2820328 catagtctcttttcggttataatgtctcttcgaaattaagaatggtcttaagtgcatagtcccttcaataatatacgtccatttggaataaaaattattt 2820229  T
Q  400 ttaagatcataatcccttttt 420  Q
    ||||||||| | |||||||||    
T  2820228 ttaagatcaaagtcccttttt 2820208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 8030064 - 8030127
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  8030064 atatattcttcttcgattcttgaagaagttagacgttagaatggt-gtaaaaccatatttgagtg 8030127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 430
Target Start/End: Complemental strand, 55252231 - 55252067
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| || | ||| || |||||||||||||| | |||||||||||| |  |||| || |    
T  55252231 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccattctcggtttaatgtcccttcgaaattaggaatggtcttaaaaacatagcccat 55252134  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataataa 430  Q
    || || || || |||  ||  ||||||| |||| | ||||||||||| ||||||||||| |||||||    
T  55252133 tcgataatataagtcccttcggaataaagaatactattaagatcatagtccctttttggaataataa 55252067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 31728919 - 31729018
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||| ||| ||| ||||||||||||  ||||||||||| ||| || |||||||||  ||| |||||||||||||| |  |||||||||    
T  31728919 ttctgtcccttcggaaataagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttctgaattaagaatggtcttaaaaacatagtccct 31729016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 31269591 - 31269507
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    |||||||||||| || |||| ||| ||||||||||||  ||||| ||||| ||| || |||||||||| ||| ||||||||||||||    
T  31269591 ttctgtcccttcggatttaagagtgttcttaagacca--tagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 31269507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 31274080 - 31273996
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    |||||||||||| || |||| ||| ||||||||||||  ||||| ||||| ||| || |||||||||| ||| ||||||||||||||    
T  31274080 ttctgtcccttcggatttaagagtgttcttaagacca--tagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 31273996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 16954653 - 16954607
Alignment:
Q  465 cttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||| |||||| ||| ||||||||||| |||||||||||||||||||    
T  16954653 cttggagaagttagaggttagaatggtggtagcaccatatttgagtg 16954607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 419
Target Start/End: Complemental strand, 6943346 - 6943196
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| ||||||| ||| |||||||||||   |||||| | || |||||| |||||||||  ||| ||||| |||||||| |  |||||| ||||     
T  6943346 tgtcccttcggaattaagagtgttcttaagacct--tagtccatattcggtataatgtcccttcagaattaagaaaggtcttaaaaaaatagtctcttcg 6943249  T
Q  368 attatttatgtctttttagaataaataatatttt-aagatcataatccctttt 419  Q
    || || ||||||  ||  ||||||||| |||||| ||||||||| ||||||||    
T  6943248 ataatatatgtccattcggaataaatagtatttttaagatcatagtccctttt 6943196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 15020077 - 15020151
Alignment:
Q  290 ttcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||||||||  ||||||||||  | |||| ||||| ||| |||| ||| ||||||||||||| |||||||||||    
T  15020077 ttcttaagacca--tagtccctttgagatataatgtccattcaaaattaaggatggtcttaagagcatagtcccttc 15020151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 33468704 - 33468764
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttga 508  Q
    |||||||||||||| ||||||||||||||  || ||||||||||| |||  |||||||||||    
T  33468704 atatattcttcttcgattcttgaagaagttggacgttagaatggt-gtaaaaccatatttga 33468764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 420
Target Start/End: Original strand, 15805217 - 15805321
Alignment:
Q  316 ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccc 415  Q
    |||||| |||||||||| ||| ||||||  |||||| || ||||||||||  || ||||||| |  ||  |||||||||||||||||| | |||| || |    
T  15805217 ggtataatgtcccttcggaattaagaataatcttaatagcatagtccctttgataatttatgccccttcggaataaataatattttaataccatagtctc 15805316  T
Q  416 ttttt 420  Q
    |||||    
T  15805317 ttttt 15805321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 32081689 - 32081753
Alignment:
Q  302 catagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||||||||| ||| || |||||||| | ||| |||||||||||||| |  |||||||||||    
T  32081689 catagtcccttttcggtttaatgtccctttggaattaagaatggtcttaaaaacatagtcccttc 32081753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 32545473 - 32545409
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||||||||||  |||||  |||||| ||| ||||||||||| |||| || |||||||||||    
T  32545473 atatattcttcttcggttctttgagaagttagaggttagaatggtggtagtactatatttgagtg 32545409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 490
Target Start/End: Original strand, 39216814 - 39216869
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatgg 490  Q
    ||||||||||||   |||||||||||||| ||||||| |||||| |||| |||||||||    
T  39216814 aatgatcttaaa---atatattcttcttcgattcttggagaagttagatattagaatgg 39216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 42758386 - 42758455
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaa 335  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| ||||| |||||| |||||||||||||    
T  42758386 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccatttttcggtataatgtcccttcgaaa 42758455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 55073592 - 55073548
Alignment:
Q  465 cttgaagaagtaagatgttagaatggtcgtagcaccatatttgag 509  Q
    |||| |||||| | ||||||||||||| |||||||||||||||||    
T  55073592 cttggagaagttatatgttagaatggtggtagcaccatatttgag 55073548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 269 - 531
Target Start/End: Original strand, 24588733 - 24588998
Alignment:
Q  269 tgtcccttctgaattaaa-gtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| |||||||| || || ||||||||| ||||| | |||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  24588733 tgtcccttcagaattaaaagtgtttttaagaccatatagttcattttcggtatattgtcccttcggaatcaagaatggtcttaagagcataatcccttca 24588832  T
Q  368 attatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattctt 467  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |    
T  24588833 attatttatgtctttttagaataaataatattttaagatcacagtcctttttcggtataataagaatgatcttaaacatatatattcttcttcaattcat 24588932  T
Q  468 gaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    | |||||| |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  24588933 ggagaagttagatgttagaatggtcgtagcaccatatttgagtggttgaaataccatattgatatt 24588998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 228 - 531
Target Start/End: Complemental strand, 8748366 - 8748062
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtc 326  Q
    |||||||||||||| |||||||||||       ||| ||| ||||| ||| ||||||| ||| |||||||||||| |||||| ||| | ||| |||||      
T  8748366 cgacttgtgttgacaagtccttctcctttttctacttcttttgtccattcggaattaagagtgttcttaagaccatatagtcacttatcggtttattgat 8748267  T
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtata 426  Q
    |||||  |||||| |||||||||||||| ||||||||||| || ||| || | | |   ||||||||||| ||||||||| ||| ||| |||| ||||||    
T  8748266 ccttcacaatcaataatggtcttaagagcatagtcccttccataattcat-tatctccggaataaataatgttttaagattatagtccattttcggtata 8748168  T
Q  427 ataaaaatgatctt-aaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  8748167 ataagaatgatcttaaaacatatatattcttcttcaattcttgaa-aagttagatgttag-atggtcgtagcaccatatttgagtggttgaaataccata 8748070  T
Q  524 ctgatatt 531  Q
     |||||||    
T  8748069 ttgatatt 8748062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 320 - 491
Target Start/End: Original strand, 2759990 - 2760159
Alignment:
Q  320 tattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttt 419  Q
    |||||||||||||   | ||||||||||||||||| ||||| || |||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||    
T  2759990 tattgtcccttcggttttaagaatggtcttaagagcatagttccctcaattatttatgtctctttagaataaataatattttaagaccatagtccatttt 2760089  T
Q  420 tggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
     |||||||||| |||||||||||  | |||||||||||||||||||||||||| || | |||||||| ||||    
T  2760090 cggtataataagaatgatcttaa--aaatatattcttcttcaattcttgaagatgttatatgttagattggt 2760159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 338 - 445
Target Start/End: Original strand, 6112403 - 6112509
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgat 437  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||||| || || ||||| ||||||    
T  6112403 aagaatggtcttaagagcatagtcccttcaattgtttatgtctctctagaataaataatattttaagatcatagt-cctttctgatacaataagaatgat 6112501  T
Q  438 cttaaaca 445  Q
    ||||||||    
T  6112502 cttaaaca 6112509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 347 - 523
Target Start/End: Original strand, 15991282 - 15991457
Alignment:
Q  347 cttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacat 446  Q
    |||||||| |||||||||  || ||||||||||  || |||||||||||||||||||||||||| |||  |||||||||||||| |||||||||  | |     
T  15991282 cttaagagcatagtccctataaatatttatgtcccttaagaataaataatattttaagatcatagtcctcttttggtataataagaatgatctt--agaa 15991379  T
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagt-gtgaaataccata 523  Q
     |||||||||| ||||||  |  |||||| |||||||||||||  ||||||||||||||| ||| || ||||||||||    
T  15991380 gtatattcttcatcaatttctagagaagttagatgttagaatgaccgtagcaccatatttaagtggttaaataccata 15991457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 531
Target Start/End: Original strand, 6112683 - 6112771
Alignment:
Q  445 atatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    |||||||||||||||| |||| || |||||| ||||||||||||||||||||||| |||||||| ||  |||| ||||||| |||||||    
T  6112683 atatatattcttcttctattcatggagaagttagatgttagaatggtcgtagcactatatttgaatgcttgaagtaccatattgatatt 6112771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 430
Target Start/End: Original strand, 4156882 - 4157047
Alignment:
Q  265 cttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    ||||||||||||| ||||||| | | ||||||||||||  |||||| |||| ||| || |||||||||| ||| |||||||||||||| |  |||||| |    
T  4156882 cttctgtcccttcggaattaagattgttcttaagacca--tagtcctttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcac 4156979  T
Q  364 ttcaattatttatgtctttttagaataaataatatt-ttaagatcataatccctttttggtataataa 430  Q
    |||||| || || |||  ||  ||||||| | |||| ||||||||||||||||||||| | |||||||    
T  4156980 ttcaataatataagtcccttcggaataaagagtattattaagatcataatccctttttagaataataa 4157047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 427
Target Start/End: Complemental strand, 12689536 - 12689380
Alignment:
Q  270 gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaa 368  Q
    |||||||| ||||||| ||| || |||||||||  |||||| |||| ||| ||  ||||||||| ||| |||||||||||||| |  |||||||||||||    
T  12689536 gtcccttcggaattaagagtgtttttaagacca--tagtccattttcggtttaacgtcccttcggaattaagaatggtcttaaaac-atagtcccttcaa 12689440  T
Q  369 ttatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    | || ||||||| || |||||||||| || ||||||||||||| ||||| ||||| ||||    
T  12689439 taatatatgtctcttcagaataaatagtacttttaagatcatagtccctatttggaataa 12689380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 16835687 - 16835786
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| || |||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  16835687 ttctgtcccttcggatttaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 16835784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 15991469 - 15991540
Alignment:
Q  453 tcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagt-gtgaaataccata 523  Q
    ||||| |||||||||| |||||| ||| ||||||||| |||||||||||||||| ||| || ||||||||||    
T  15991469 tcttcatcaattcttggagaagttagaagttagaatgatcgtagcaccatatttaagtggttaaataccata 15991540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 15999131 - 15999202
Alignment:
Q  453 tcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagt-gtgaaataccata 523  Q
    ||||| |||||||||| |||||| ||| ||||||||| |||||||||||||||| ||| || ||||||||||    
T  15999131 tcttcatcaattcttggagaagttagaagttagaatgatcgtagcaccatatttaagtggttaaataccata 15999202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 17914154 - 17914056
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||| ||| || |||| ||| ||||||||||||  |||||| |||| | |||| |||||||||| ||| ||||||||||||||| | |||||||||    
T  17914154 ttctgtcctttcggatttaagagtgttcttaagacca--tagtccattttcgatataatgtcccttcggaattaagaatggtcttaagtgcatagtccct 17914057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 422
Target Start/End: Original strand, 17964047 - 17964241
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaatta-aagtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||||||  ||| |||| |||||  |||||||| |||| | | || |||    
T  17964047 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaattatgagtgttctcaagac--catagtcctttttcgttttaatgt 17964144  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    ||||||| ||| |||||||||||||| |  ||||||||||| || || ||||||  || | |||||| | || ||||||||||||| ||||| |||||    
T  17964145 cccttcggaattaagaatggtcttaa-aacatagtcccttcgataatatatgtccattcaaaataaagagtacttttaagatcatagtccctatttgg 17964241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 6407390 - 6407489
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| || |||| ||| ||||||||||||  |||||||||||| ||| || ||| |||||| ||| |||||||||||||| |  ||||||||    
T  6407390 ttctgtcccttcggatttaagagtgttcttaagacca--tagtccctttttcggtttaatgttccttcggaattaagaatggtcttaaaaacatagtccc 6407487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 11570273 - 11570435
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttgg-tatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||||| ||| | | || |||||||||| ||| |||||||||||||| |  |||||||     
T  11570273 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccctctttcgatttaatgtcccttcggaattaagaatggtcttaaaaacatagtcca 11570370  T
Q  364 ttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    ||| || || ||||||  ||  || |||| | || ||||||||||||| ||||| ||||| ||||    
T  11570371 ttcgataatatatgtcccttcggattaaagagtacttttaagatcatagtccctatttggaataa 11570435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 14042104 - 14042056
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    |||| |||||||||||||| ||||||||||||||||  ||||| |||||    
T  14042104 tataatgtcccttcgaaattaagaatggtcttaagaacatagttccttc 14042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 14509348 - 14509285
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||||| ||||||||| |||| ||| ||||| ||||| |||  ||||||||||||||    
T  14509348 atatattcttcttcgattcttgaaaaagttagacgttagtatggt-gtaaaaccatatttgagtg 14509285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 17913960 - 17913897
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||| |||||  |||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  17913960 atatatttttctttgattcttgaagaagttagacgttagaatggt-gtaaaaccatatttgagtg 17913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 232 - 531
Target Start/End: Original strand, 18784070 - 18784372
Alignment:
Q  232 ttgtgttgacgagtccttctccnnnnnnnactccttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtccctt 330  Q
    ||||||||||||||||||||||       ||||||||||||||||| ||||||| ||| |||||||||||| ||||||  |||| |||||||||| | ||    
T  18784070 ttgtgttgacgagtccttctcctttttctactccttctgtcccttcggaattaagagtgttcttaagaccatatagtcttttttcggtatattgttcatt 18784169  T
Q  331 cgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataa 430  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||| ||||||||||    
T  18784170 cggaatcaagaatggtcttaagagcatagtcccttcaattatttatgtctctttagaataaataataatttaagatcatagtaccttttcggtataataa 18784269  T
Q  431 aaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgat 528  Q
     |||||| ||||||||||||||| |||||| |||| || |||||| | |||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  18784270 gaatgattttaaacatatatattattcttctattcatggagaagttaaatgttagaatggtcgtagcaccatatttgagtggttgaaataccatattgat 18784369  T
Q  529 att 531  Q
    |||    
T  18784370 att 18784372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 3094671 - 3094389
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||| |||||||||||| ||||||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  3094671 cgacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagac--catagtcccttttcggtttaatgt 3094574  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||||||| |||||||||||||| || ||||||||||| || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  3094573 cccttcgaaattaagaatggtcttaacagcatagtcccttcgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 3094475  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  3094474 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 3094389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 228 - 511
Target Start/End: Original strand, 8267348 - 8267631
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtc 326  Q
    |||||||||||||| ||||||| |||       |||||||||||| |||| ||||||| | | ||||||||||||  |||||| | || ||| |||||||    
T  8267348 cgacttgtgttgacaagtccttatcctttttctactccttctgtctcttcagaattaagaatgttcttaagacca--tagtccttattcggtttattgtc 8267445  T
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttt-tggtat 425  Q
    | |||||||  ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||  ||||||||  |||||    
T  8267446 ctttcgaaaataagaatggtcttaagagcatagtcccttcaattattcatgtctctttagaataaatattattttaagatcatggtcccttttacggtat 8267545  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||| ||||||||||| |||||||||||||||  |||| || |||||| |||||||||||||||||||||||||||||||||||    
T  8267546 aataaagatgatcttaaaaatatatattcttcttttattcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 8267631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 338 - 511
Target Start/End: Complemental strand, 33055515 - 33055340
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgat 437  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||| |||| ||||| ||||||    
T  33055515 aagaatggtgttaagaggatagtcccttcaattgtttatgtctctttagaataaataatattttaagatcatagtcctttttcggtacaataagaatgat 33055416  T
Q  438 cttaaacatat--atattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||  |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  33055415 cttaaacatatatatattcttcttctattcatgaagaagtaaaatgttagaatggtcgtagcaccatatttgagtg 33055340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 338 - 491
Target Start/End: Original strand, 41097581 - 41097733
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatga 436  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  41097581 aagaatggtcttaagagcatagtcccttcaattatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtataataaagatga 41097680  T
Q  437 tcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||  |||||||||||||||||||||||| ||||||  ||||||||||||||    
T  41097681 tcttaa--atatatattcttcttcaattcttggagaagttggatgttagaatggt 41097733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 341 - 511
Target Start/End: Original strand, 40232990 - 40233161
Alignment:
Q  341 aatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatctt 440  Q
    |||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||| |||| ||||| |||||||||    
T  40232990 aatgatcttaagagcatagtcccttcaattgtttatgtctctttagaataaataatattttaagatcatagt-ccttttcggtacaataagaatgatctt 40233088  T
Q  441 aaac--atatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||  |||||||||||||||| |||| || |||||| |||| |||||||||||||| |||||| ||||||||    
T  40233089 aaacatatatatattcttcttctattcatggagaagttagatattagaatggtcgtaacaccatgtttgagtg 40233161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 17213989 - 17214151
Alignment:
Q  261 actccttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatag 359  Q
    ||||||| ||| ||||| ||||||| ||| ||||||||||||  |||| |||||| ||| |||||||| |||| ||  |||||||||||||| || ||||    
T  17213989 actccttatgttccttcggaattaagagtgttcttaagacca--tagttccttttcggtttattgtcctttcggaactaagaatggtcttaacagcatag 17214086  T
Q  360 tcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtata 426  Q
    || ||||||||||||  |||| ||||||||||||||||||||||||||||| ||||| || ||||||    
T  17214087 tcacttcaattattt--gtctctttagaataaataatattttaagatcatagtccctattcggtata 17214151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 323 - 511
Target Start/End: Original strand, 39037296 - 39037479
Alignment:
Q  323 tgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcc-ctttttg 421  Q
    ||||| |||||||| ||||||| | ||||||| |||||| |||  || | |||||||  ||   ||||||||||||||||||||||||||||  ||||||    
T  39037296 tgtccattcgaaattaagaatgatgttaagagcatagtcgcttttatgaattatgtcccttcgaaataaataatattttaagatcataatcctttttttg 39037395  T
Q  422 gtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||||| |||||||||||      || || || |||||||| || |||||| |||| ||| |||||| |||||||||||||| ||||    
T  39037396 gtataataagaatgatcttaa------attttttttttcaattcctgcagaagttagatattaaaatggtggtagcaccatatttaagtg 39037479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 228 - 427
Target Start/End: Original strand, 51040999 - 51041198
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||| ||| |||||||||| ||||||| ||||||||||||||||  ||||||||||| ||| || |||    
T  51040999 cgacttgtgttgacaagtccttctcctttttctacttctttctgtcccttcggaattaagagtattcttaagacca--tagtcccttttcggtttaatgt 51041096  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||  ||| |||||||||||||| |  ||||||||||| || || |||||   ||||||||||| | || ||||||||||||| ||||| ||||| |    
T  51041097 cccttcagaattaagaatggtcttaa-aacatagtcccttcgataatatatgttcctttagaataaagagtacttttaagatcatagtccctatttggaa 51041195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 366
Target Start/End: Complemental strand, 10135932 - 10135794
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||| ||| ||||||||||||||  ||||||||||||| ||| || |||    
T  10135932 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaaataagagtattcttaagac--catagtcccttttcggtttaatgt 10135835  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||| ||| |||||||||||||| |  |||||||||||    
T  10135834 cccttcggaattaagaatggtcttaaaaacatagtcccttc 10135794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 428
Target Start/End: Complemental strand, 16834040 - 16833878
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||  | | || |||||||||| ||| |||||||||||||||   |||||||||    
T  16834040 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccctttccgatttaatgtcccttcggaattaagaatggtcttaagttcatagtccct 16833943  T
Q  365 tcaat-tatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataat 428  Q
    || || | ||||||||  ||| |||||||||||| |||||||||||| | ||||||| ||||||||    
T  16833942 tcgatatttttatgtc-ctttggaataaataataatttaagatcatagttcctttttcggtataat 16833878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 427
Target Start/End: Original strand, 16649166 - 16649323
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||||||| |||||||||||||| |  |||||||||||     
T  16649166 tgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa-aacatagtcccttcg 16649262  T
Q  368 attatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || ||||||  || |||||||| | || ||||||||||||| ||| | ||||| ||||    
T  16649263 ataatatatgtcccttcagaataaagagtatttttaagatcatagtccttatttggaataa 16649323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 366
Target Start/End: Complemental strand, 10140700 - 10140562
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||| ||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  10140700 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaaataagagtgttcttaagac--catagtcccttttcggtttaatgt 10140603  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||| ||| |||||||||||||| |  |||||||||||    
T  10140602 cccttcggaattaagaatggtcttaaaaacatagtcccttc 10140562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 412
Target Start/End: Original strand, 28434167 - 28434308
Alignment:
Q  270 gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaa 368  Q
    |||||||| ||||||| ||| |||||||||  ||||||||  ||||||||||| | |||||||||||| |||||||||||||| || ||||||| ||| |    
T  28434167 gtcccttcggaattaagagttttcttaaga--acatagtct-tttttggtataatctcccttcgaaattaagaatggtcttaaaagcatagtccattcga 28434263  T
Q  369 ttatttatgtctttttagaataaataatattt-taagatcataat 412  Q
    | || ||||||| ||   |||||| ||||||| ||||||||||||    
T  28434264 taatatatgtctcttcgaaataaagaatatttgtaagatcataat 28434308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 39200290 - 39200389
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||  ||||||| ||| ||||||| ||||  ||||||||||||||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  39200290 ttctgtccctttggaattaagagtgttcttaatacca--tagtccctttttggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 39200387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 19798529 - 19798611
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtctt 349  Q
    ||||||||||||  |||||| ||| ||||||||||||  ||||||||||||| | || |||||||||||||| ||||||||||||    
T  19798529 ttctgtcccttcgtaattaagagtgttcttaagacca--tagtccctttttgatttaatgtcccttcgaaattaagaatggtctt 19798611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 428
Target Start/End: Complemental strand, 7882548 - 7882389
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||||  ||||||| ||| ||||||||||||  |||||||||||| |||||| |||||||||  ||| |||||||||||||||   | ||||||| |    
T  7882548 tgtccctttggaattaagagtgttcttaagacca--tagtccctttttcggtataatgtcccttcagaattaagaatggtcttaagttcagagtccctcc 7882451  T
Q  367 aat-tatttatgtctttttagaataaataatattttaagatcataatccctttttggtataat 428  Q
     || | ||||||||  ||  |||| ||||||| |||||||||||| |||||||| ||||||||    
T  7882450 gatatttttatgtc-cttcggaatgaataatactttaagatcatagtcccttttcggtataat 7882389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 9328099 - 9328146
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtccctt 365  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||    
T  9328099 tatattgtcccttcgaaattaagaatggtcttaagaacatagtccctt 9328146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 491
Target Start/End: Complemental strand, 7882370 - 7882314
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||||||||   |||||||||||||| |||||||||||||| ||| |||||||||||    
T  7882370 aatgatcttaaa---atatattcttcttcgattcttgaagaagttagacgttagaatggt 7882314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 427
Target Start/End: Original strand, 47450757 - 47450915
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| ||||||| ||| || |||||||||  ||||||||||| ||| || || |||||| |||| |||||||||||||| |  |||||| ||||     
T  47450757 tgtcccttcggaattaagagtgtttttaagacca--tagtcccttttcggtttaatgccccttcaaaattaagaatggtcttaaaaacatagtctcttcg 47450854  T
Q  368 attatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || ||||||  ||  ||||||| | || ||||||||||||| ||||| ||||| ||||    
T  47450855 ataatatatgtcccttcggaataaagagtacttttaagatcatagtccctatttggaataa 47450915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 16833848 - 16833785
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||||| |||||||| ||||| ||| ||||||||||| |||  ||||||||||||||    
T  16833848 atatattcttcttcgattcttgatgaagttagacgttagaatggt-gtaaaaccatatttgagtg 16833785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 409
Target Start/End: Original strand, 27311375 - 27311459
Alignment:
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttag-aataaataatat-tttaagatcat 409  Q
    |||||||| | |||||||||||| |||||||||||| ||| || |||||||||  ||| | |||||||||||| |||||||||||    
T  27311375 ccttcgaagttaagaatggtcttcagagtatagtcctttcgataatttatgtccctttcgaaataaataatatgtttaagatcat 27311459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 2493461 - 2493504
Alignment:
Q  323 tgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||    
T  2493461 tgtcccttcggaattaagaatggtcttaagagcatagtcccttc 2493504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 9352945 - 9352992
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtccctt 365  Q
    |||||||| |||||||||| ||||||||||||||||  ||||||||||    
T  9352945 tatattgttccttcgaaattaagaatggtcttaagaacatagtccctt 9352992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 25844320 - 25844220
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    ||||||||||||  | |||| ||| ||||||||||||  |||||||||||| ||| || |||||||||| ||| |||||||||||||| |  ||||||||    
T  25844320 ttctgtcccttcgaatttaagagtgttcttaagacca--tagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccc 25844223  T
Q  364 ttc 366  Q
    |||    
T  25844222 ttc 25844220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 427
Target Start/End: Original strand, 26927209 - 26927408
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||| ||||||       ||||| |||||||||||   |||||| ||| ||||||||||  ||||||||||||| ||| || | |    
T  26927209 cgacttgtgttgacaagtcattctcctttttctactcctttctgtccctttgaaattaagagtgttcttaagac--catagtcccttttcggtttaatat 26927306  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||| | ||| |||||||||||| | |  ||||||||||| || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| |    
T  26927307 ccctttggaattaagaatggtctt-acaacatagtcccttcgataatatatgtcccttcagaataaagagtatttttaagatcatagtccctatttggaa 26927405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 491
Target Start/End: Original strand, 23192537 - 23192593
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||||||||   |||||||||| ||| |||||||||||||| ||| |||||||||||    
T  23192537 aatgatcttaaa---atatattcttattcgattcttgaagaagttagacgttagaatggt 23192593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 36725168 - 36725124
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtcc 362  Q
    |||| |||||||||||||| |||||||||||||||| || |||||    
T  36725168 tataatgtcccttcgaaattaagaatggtcttaagaataaagtcc 36725124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 228 - 531
Target Start/End: Original strand, 43302196 - 43302503
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| ||||||| |||| ||||||| ||| |||||||||||| ||| |||||| | | ||||||||    
T  43302196 cgacttgtgttgacaagtccttctcctttttttactcctttctgtcgcttcggaattaagagtgttcttaagaccatataatcccttgtcgatatattgt 43302295  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    || |||| |||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||    
T  43302296 ccattcggaatcaataatggtcttaagagcatagtcccttcaattatttatgtccttttagaataaagaatattttaagatcatagtcccttttcggtat 43302395  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| || ||||||||||||  ||||||||||||    
T  43302396 aataagaatgatcttaaacatatatattcttcttcaattcatggagaagttagatgttagaatggtcgtaacatcatatttgagtggttgaaataccata 43302495  T
Q  524 ctgatatt 531  Q
     |||||||    
T  43302496 ttgatatt 43302503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 266 - 491
Target Start/End: Original strand, 8330915 - 8331138
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||| ||| ||||||| ||||||||||||||||  |||||| |  ||||| |||| ||| |||||||  ||||||||||||||||| |||||||||    
T  8330915 ttctgtccattcggaattaagagtattcttaagacca--tagtccatcgttggtttattatcctttcgaaaataagaatggtcttaagagcatagtccct 8331012  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaat 463  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||  |||||||||||||||||||    
T  8331013 tcaattatttatttctctttagaataaataatattttaagatcatgatccctttttcggtataataaagatgatcttaa--atatatattcttcttcaat 8331110  T
Q  464 tcttgaagaagtaagatgttagaatggt 491  Q
    ||||| ||||||  ||||||||||||||    
T  8331111 tcttggagaagttggatgttagaatggt 8331138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 229 - 511
Target Start/End: Original strand, 31449378 - 31449659
Alignment:
Q  229 gacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtc 326  Q
    ||||||||||||| ||| |||||||       ||||||| |||||||||| ||||||| ||| ||||||||||||  |||||| |||| ||| || ||||    
T  31449378 gacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagacca--tagtccattttcggtttaatgtc 31449475  T
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtata 426  Q
    |||||| ||| ||||||||||||||||| ||||||||||| || ||| || | | ||  ||||||||||| ||||||||||||| |||||||| ||||||    
T  31449476 ccttcggaattaagaatggtcttaagagcatagtcccttcgataattcat-tatcttcggaataaataatgttttaagatcatagtcccttttcggtata 31449574  T
Q  427 ataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||| ||||||||||| ||||||||||||||||||| || || |||||| |||||||| ||||||||||||||||||||||||||    
T  31449575 ataagaatgatcttaagcatatatattcttcttcaactcatggagaagttagatgttaaaatggtcgtagcaccatatttgagtg 31449659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 228 - 511
Target Start/End: Original strand, 4237853 - 4238135
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||||| |||||| ||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||    
T  4237853 cgacttgtgttgacaagttcttctcctttttctactcctttctgtccattcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgt 4237950  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| ||||||| |||||| || ||||||||||| ||  || || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  4237951 cccttcggaattaagaatgatcttaacagcatagtcccttcgatagttcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 4238049  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||| |||||||||||||||    
T  4238050 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtaacaccatatttgagtg 4238135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 228 - 511
Target Start/End: Original strand, 4242592 - 4242874
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||||| |||||| ||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||    
T  4242592 cgacttgtgttgacaagttcttctcctttttctactcctttctgtccattcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgt 4242689  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| ||||||| |||||| || ||||||||||| ||  || || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  4242690 cccttcggaattaagaatgatcttaacagcatagtcccttcgatagttcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 4242788  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||| |||||||||||||||    
T  4242789 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtaacaccatatttgagtg 4242874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 320 - 511
Target Start/End: Original strand, 34818311 - 34818500
Alignment:
Q  320 tattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttt 419  Q
    |||| ||| |||||||  ||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||  ||| ||||    
T  34818311 tattatcctttcgaaaataagaatggtcttaagagcatagtccattcaattatttatgtttctttagaataaataatattttaagatcatggtccttttt 34818410  T
Q  420 tggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
     ||||||||||| ||||||||||  |||||||| ||||||||||||||| |||||| ||||||||||||||| |||  ||||||||||||||    
T  34818411 cggtataataaagatgatcttaa--atatatatacttcttcaattcttggagaagttagatgttagaatggtagtaataccatatttgagtg 34818500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 338 - 491
Target Start/End: Original strand, 25367609 - 25367761
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatga 436  Q
    ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  25367609 aagaatggtcttaagagcatagtcccttcatttatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtataataaagatga 25367708  T
Q  437 tcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||  |||||||||||||||||||||||| ||||||  ||||||||||||||    
T  25367709 tcttaa--atatatattcttcttcaattcttggagaagttggatgttagaatggt 25367761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 338 - 491
Target Start/End: Complemental strand, 37772177 - 37772025
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatga 436  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| |||||||||||  |||    
T  37772177 aagaatggtcttaagagcatagtcccttcaattatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtataataaaggtga 37772078  T
Q  437 tcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||  |||||||||||||||||||||||| ||||||  ||||||||||||||    
T  37772077 tcttaa--atatatattcttcttcaattcttggagaagttggatgttagaatggt 37772025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 306 - 424
Target Start/End: Original strand, 17953542 - 17953662
Alignment:
Q  306 gtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaat-tatttatgtctttttagaataaataatattttaa 403  Q
    |||||||||| |||||| ||||||||| |||| ||||||||||||||||| ||||||||||| || | ||||||||  || |||||||||||||||||||    
T  17953542 gtccctttttcggtataatgtcccttccaaattaagaatggtcttaagagcatagtcccttcgatatttttatgtcccttaagaataaataatattttaa 17953641  T
Q  404 gatcataatccctttttggta 424  Q
     |||||| | |||||| ||||    
T  17953642 catcatagttccttttcggta 17953662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 424
Target Start/End: Original strand, 15875269 - 15875383
Alignment:
Q  311 tttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaat-tatttatgtctttttagaataaataatattttaagatcat 409  Q
    |||| |||||| | |||||||| ||| || |||||| ||||||||||||||||||  || | ||||||||  || |||||||||||||||||||||||||    
T  15875269 ttttcggtataatctcccttcggaattaaaaatggtattaagagtatagtccctttgatatttttatgtcccttcagaataaataatattttaagatcat 15875368  T
Q  410 aatccctttttggta 424  Q
    | |||||||| ||||    
T  15875369 agtcccttttcggta 15875383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 15951080 - 15951241
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||| | |  |||||||||    
T  15951080 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtctttaaaacatagtccct 15951177  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    |  || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| ||||    
T  15951178 ttgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttggaataa 15951241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 44925450 - 44925605
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| |||| |||  | |||||||||| ||| |||||||||||||| |  |||| ||||    
T  44925450 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccattttcggttcaatgtcccttcggaattaagaatggtcttaa-aacatagcccct 44925546  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    || || || ||||||  || |||||||||| || ||||||||||||| ||||| |||||    
T  44925547 tcgataatatatgtcccttcagaataaatagtacttttaagatcatagtccctatttgg 44925605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 40125605 - 40125680
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||||||||   |||||||||||||| |||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  40125605 aatgatcttaaa---atatattcttcttcgattcttgaagaagttagacgttagaatggt-gtaaaaccatatttgagtg 40125680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 17026494 - 17026350
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatat-tgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||||| || ||| ||  |||||||||| ||| |||||||||||||||   ||||||||    
T  17026494 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtccc 17026397  T
Q  364 ttcaat-tatttatgtctttttagaataaataatattttaagatcata 410  Q
    ||| || | ||||||||  ||  |||||||||||| ||||||||||||    
T  17026396 ttcgatatgtttatgtc-cttcggaataaataataatttaagatcata 17026350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 17556986 - 17556842
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatat-tgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||||| || ||| ||  |||||||||| ||| |||||||||||||||   ||||||||    
T  17556986 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtccc 17556889  T
Q  364 ttcaat-tatttatgtctttttagaataaataatattttaagatcata 410  Q
    ||| || | ||||||||  ||  |||||||||||| ||||||||||||    
T  17556888 ttcgatatgtttatgtc-cttcggaataaataataatttaagatcata 17556842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 18875917 - 18876001
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    ||||||||||||  |||||| ||| ||||||||||||  | ||||||||| ||| || |||||||||||||| ||||||||||||||    
T  18875917 ttctgtcccttcgaaattaagagtgttcttaagacca--ttgtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa 18876001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 38181772 - 38181856
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| || |||||||||||    
T  38181772 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaaaaatggtcttaa 38181856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 7002158 - 7002064
Alignment:
Q  327 ccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatcccttttt 420  Q
    |||||| ||||||||||| ||||||| | ||||||||||  || |||||||||  ||| ||||||| |||| ||||||||||||| ||| |||||    
T  7002158 ccttcggaatcaagaatgatcttaagggcatagtccctttgataatttatgtccctttggaataaaaaatatttttaagatcatagtcctttttt 7002064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 40125481 - 40125578
Alignment:
Q  323 tgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaat-tatttatgtctttttagaataaataatattttaagatcataatcccttttt 420  Q
    |||||||||| ||| |||||||||||||||   ||||||||||| || | |||||||| ||  | ||||||||||| |||||||||||| |||||||||    
T  40125481 tgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcga-aataaataataatttaagatcatagtcccttttt 40125578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 349
Target Start/End: Complemental strand, 19167213 - 19167131
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtctt 349  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || || ||||||| ||| ||||||||||||    
T  19167213 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgacccttcggaattaagaatggtctt 19167131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 511
Target Start/End: Original strand, 17953706 - 17953762
Alignment:
Q  455 ttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||| ||||||  |||||| ||||||||||||||| ||||||| |||||||||||    
T  17953706 ttcttcgattcttcgagaagttagatgttagaatggtggtagcacaatatttgagtg 17953762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 1910484 - 1910568
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    |||||||||||  ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||  ||| ||||||||||||||    
T  1910484 ttctgtccctttggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcataattaagaatggtcttaa 1910568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 531
Target Start/End: Complemental strand, 14035803 - 14035717
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    |||||||  ||||| ||||||  |||||| | || |||||||||| ||||||||||||||||| |  |||||||||||| |||||||    
T  14035803 atatatttgtcttcgattcttagagaagttaaatattagaatggtggtagcaccatatttgagcggttgaaataccatattgatatt 14035717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 17020917 - 17020818
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| || | ||| || |||||||| | ||| |||||||||||||| |  |||||||||    
T  17020917 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcctttctcggtttaatgtccctttggaattaagaatggtcttaaaaacatagtccct 17020820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 17551354 - 17551255
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| || | ||| || |||||||| | ||| |||||||||||||| |  |||||||||    
T  17551354 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcctttctcggtttaatgtccctttggaattaagaatggtcttaaaaacatagtccct 17551257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 13799434 - 13799499
Alignment:
Q  302 catagtccctttt-tggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||||||||| | |||||  || |||||||||| || |||||||||||||| |||||||||||    
T  13799434 catagtcccttttgtagtataacgttccttcgaaataaaaaatggtcttaagagcatagtcccttc 13799499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 15875422 - 15875471
Alignment:
Q  461 aattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagt 510  Q
    |||||||  |||||| ||||||||||||||| || |||||||||||||||    
T  15875422 aattcttcgagaagttagatgttagaatggtggtggcaccatatttgagt 15875471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 475
Target Start/End: Complemental strand, 17026311 - 17026271
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagt 475  Q
    ||||||||||||   |||||||||||||||||||||||||||||    
T  17026311 aatgatcttaaa---atatattcttcttcaattcttgaagaagt 17026271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 475
Target Start/End: Complemental strand, 17556803 - 17556763
Alignment:
Q  432 aatgatcttaaacatatatattcttcttcaattcttgaagaagt 475  Q
    ||||||||||||   |||||||||||||||||||||||||||||    
T  17556803 aatgatcttaaa---atatattcttcttcaattcttgaagaagt 17556763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 290 - 523
Target Start/End: Complemental strand, 35602445 - 35602210
Alignment:
Q  290 ttcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaat 389  Q
    |||||||||||| |||||||||| | | ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  35602445 ttcttaagaccatatagtcccttgtcgatatattgtcccttcggaatcaagaatggtcttaagagcacagtcccttcaattatttatgtctttttagaat 35602346  T
Q  390 aaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatg 489  Q
    ||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  35602345 aaagaatattttaagatcatagtcccttttcggtataataagaatgatcttaaacatatatattcttcttcaattcatggagaagttagatgttagaatg 35602246  T
Q  490 gtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    ||  || |||||||||||||||  ||||||||||||    
T  35602245 gttttaacaccatatttgagtggttgaaataccata 35602210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 266 - 531
Target Start/End: Original strand, 10160272 - 10160540
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    ||||||| ||||  |||||| ||| |||||||||||| ||||||| || | | ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  10160272 ttctgtcgcttcgaaattaagagtgttcttaagaccatatagtccattgtcgatatattgtcccttcggaatcaagaatggtcttaagagcatagtccct 10160371  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaatt 464  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  10160372 tcaattatttatgtccttttagaataaagaatattttaagatcatagtccattttcggtataataagaatgatcttaaacatatatattcttcttcaatt 10160471  T
Q  465 cttgaagaagtaagatgttagaatggtcgtagcaccatatttgagt--gtgaaataccatactgatatt 531  Q
    | || |||||| |||||||||| |||||||| ||||||||||||||   |||||||||||| |||||||    
T  10160472 catggagaagttagatgttagactggtcgtaacaccatatttgagtagttgaaataccatattgatatt 10160540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 274 - 511
Target Start/End: Complemental strand, 30658712 - 30658476
Alignment:
Q  274 cttctgaattaaagtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatt 373  Q
    |||| ||||||| || ||||| |||||| |||||||||| | | ||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  30658712 cttcggaattaaggtgttcttcagaccatatagtcccttgtcgatatattgtcccttcggaatcaagaatggtcttaagagcatagtca-ttcaattatt 30658614  T
Q  374 tatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaa 473  Q
    |||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| || ||||    
T  30658613 tatgtccttttagaataaataatattttaagatcatagtcccttttcggtataataagaatgatcttaaacatatatattcttcttcaattcatggagaa 30658514  T
Q  474 gtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    || ||||||||||||||||||| |||||||||||||||    
T  30658513 gtcagatgttagaatggtcgtaacaccatatttgagtg 30658476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 30643706 - 30643423
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttct-gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||| | |||||||||||       ||||||| | ||| |||||||||||| ||| |||||||||||| |||||||||| | | |||||| |    
T  30643706 cgacttgtgttggcaagtccttctcctttttctactcctttttgtcgcttctgaattaagagtgttcttaagaccatatagtcccttgtcgatatattat 30643607  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||    
T  30643606 cccttcggaatcaagaatggtcttaagagcatagtcccttcaattatttatgtccttttagaataaagaatattttaagatcatagtcccttttcggtat 30643507  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| |||||||||||||||  ||||||||||||||||| || |||||| ||||||||||||||| ||| || ||||||||||||    
T  30643506 aataagaatgatcttaaacat--atattcttcttcaattcatggagaagtcagatgttagaatggtggtaacatcatatttgagtg 30643423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 269 - 491
Target Start/End: Original strand, 6297447 - 6297667
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| ||||||| ||| ||||||||||||  |||||| |  | ||| |||| ||| |||| ||  ||||||||||||||||| ||||||||||||    
T  6297447 tgtcccttcggaattaagagtgttcttaagacca--tagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtcccttca 6297544  T
Q  368 attatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaattct 466  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |||||||||  |||||||||| ||||||||||  ||||||||||||||||||||||    
T  6297545 attatttatgtctctttagaataaataatattttaagatcatggtccctttttcagtataataaagatgatcttaa--atatatattcttcttcaattct 6297642  T
Q  467 tgaagaagtaagatgttagaatggt 491  Q
    || ||||||   |||||||||||||    
T  6297643 tggagaagttgaatgttagaatggt 6297667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 266 - 511
Target Start/End: Original strand, 17453134 - 17453373
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||  ||||||| |||  ||||||||||| |  |||| ||||  ||||||||| |||||| ||| |||||||||||||| || |||||||||    
T  17453134 ttctgtccctttggaattaagagtgctcttaagaccaaa--gtcctttttcagtatattgttccttcggaattaagaatggtcttaatagcatagtccct 17453231  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaat 463  Q
    ||||||||||||   | || ||||||||||||||||||| |||||| ||||||||| ||||||||||  ||||||||||      ||||||||||||||     
T  17453232 tcaattatttataagtcttcagaataaataatattttaatatcatagtccctttttcggtataataaggatgatcttaa------atattcttcttcaaa 17453325  T
Q  464 tcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| |||||| |||| |||||||||||||| |||||||||||||||    
T  17453326 tcttggagaagttagatattagaatggtcgtatcaccatatttgagtg 17453373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 19538781 - 19538664
Alignment:
Q  416 tttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tg 513  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||||||||  ||    
T  19538781 ttttcggtataataagaatgatcttaaacatatatattcttcttcaattcatggagaagatagatgttagaatggtcgtagcaccatatttgagtggttg 19538682  T
Q  514 aaataccatactgatatt 531  Q
    |||||||||| |||||||    
T  19538681 aaataccatattgatatt 19538664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 324 - 523
Target Start/End: Original strand, 19094080 - 19094295
Alignment:
Q  324 gtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaat-tatttatgtctttttagaataaataatattttaagatcataatccctttttgg 422  Q
    ||||||||| ||| ||||||||||||||||| ||| ||| |||||| | |||||||| ||| |||||||||||||||||||||||||||||| |||| ||    
T  19094080 gtcccttcggaattaagaatggtcttaagagcatactcctttcaatatttttatgtcctttcagaataaataatattttaagatcataatccattttcgg 19094179  T
Q  423 tataa---------------taaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttg 507  Q
    |||||               ||| |||||||||  ||| ||| |||||||||| ||||||  |||||| ||||||||||||||| |||||||||||||||    
T  19094180 tataatgccccttcgaaaattaagaatgatctt--acaaataaattcttcttcgattcttcgagaagttagatgttagaatggtggtagcaccatatttg 19094277  T
Q  508 agtg--tgaaataccata 523  Q
    ||||  ||||||||||||    
T  19094278 agtgattgaaataccata 19094295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 427
Target Start/End: Complemental strand, 18344988 - 18344831
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| ||||||| ||| ||||||||||||  ||||||||||||||| || ||||| |||| ||| |||||||||||||| |  |||||||||||     
T  18344988 tgtcccttcggaattaagagtgttcttaagacca--tagtccctttttggtttaatgtcctttcggaatgaagaatggtcttaa-aacatagtcccttcg 18344892  T
Q  368 attatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || ||||||  || |||||||||| || ||||||||||||| ||||| ||||| ||||    
T  18344891 ataatatatgtcccttcagaataaatagtacttttaagatcatagtccctatttggaataa 18344831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 511
Target Start/End: Complemental strand, 30651484 - 30651229
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatat-tgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| |||| || ||| ||||||||||||  |||||||| || ||| ||  |||||||||| ||| |||||||||||||||   ||||||||    
T  30651484 ttctgtcccttcggaataaagagtgttcttaagacca--tagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtccc 30651387  T
Q  364 ttcaat-tatttatgtctttttagaataaataatattttaagatcataatccctttttggtataat----------aaa----aatgatcttaaacatat 448  Q
    ||| || | |||||||| ||   |||||||||||| |||||||||||| |||||||| ||||||||          |||    ||||||||||||   ||    
T  30651386 ttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtcccttttcggtataatgtcccttcaaaaatatgaatgatcttaaa---at 30651291  T
Q  449 atattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||||| |||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  30651290 atattcttcttcgattcttgaagaagttagacgttagaatggt-gtaaaaccatatttgagtg 30651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 17968490 - 17968645
Alignment:
Q  266 ttctgtcccttctgaattaaa-gtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| |||||||| || ||||||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  17968490 ttctgtcccttcggaattaaaagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccct 17968586  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    || || || ||||||  || | |||||| | || ||||||||||||| ||||| |||||    
T  17968587 tcgataatatatgtcccttcaaaataaagagtacttttaagatcatagtccctatttgg 17968645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 12797493 - 12797333
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||| ||||  ||||||||||| ||| || |||||||||  ||| ||||||| |||||| |  |||||||||    
T  12797493 ttctgtcccttcggaattaagagtgttcttaatacca--tagtcccttttcggtttaatgtcccttcagaattaagaatgctcttaaaac-atagtccct 12797397  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || || ||||||  || |||||||| | || ||||||||||||||||||| ||||| ||||    
T  12797396 tcgataatatatgtcccttcagaataaagagtacttttaagatcataatccctgtttggaataa 12797333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 25496852 - 25496995
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| |||||||||||   ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  25496852 ttctgtcccttcggaattaagagtgttcttaagacct--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccct 25496948  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcata 410  Q
    || || || ||||||  || |||||||| | || |||||||||||||    
T  25496949 tcgataatatatgtcccttcagaataaagagtacttttaagatcata 25496995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 42926171 - 42926333
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||| ||||  |||| |||||| ||| || |||||||||  ||| ||||||||| |||||   |||||||||    
T  42926171 ttctgtcccttcggaattaagagtgttcttaatacca--tagttccttttcggtttaatgtcccttcagaattaagaatggtattaagttcatagtccct 42926268  T
Q  365 tcaat-tatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataat 428  Q
    || || | |||||||| |||  |||||||||||| |||||||||||| ||| ||||| ||||||||    
T  42926269 tcgatatttttatgtcctttg-gaataaataataatttaagatcatagtccttttttcggtataat 42926333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 410
Target Start/End: Original strand, 13291112 - 13291205
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcata 410  Q
    |||| |||||||||| |||  | |||||||||||||||||| ||||||| || |||||||||  || |||||||||| || |||||||||||||    
T  13291112 tataatgtcccttcggaattgacaatggtcttaagagtataatcccttcgataatttatgtcccttaagaataaatagtatttttaagatcata 13291205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 25477824 - 25477967
Alignment:
Q  266 ttctgtcccttctgaattaaa-gtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    ||||||||||||  ||||||| || || |||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  25477824 ttctgtcccttcgaaattaaaagtgtttttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccct 25477920  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcata 410  Q
    || || || ||||||  || |||||||| | || |||||||||||||    
T  25477921 tcgataatatatgtcccttcagaataaagagtacttttaagatcata 25477967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 531
Target Start/End: Complemental strand, 28855341 - 28855283
Alignment:
Q  475 taagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgatatt 531  Q
    ||||||||||||||||||||| |||||||||||||||  |||| ||||||| |||||||    
T  28855341 taagatgttagaatggtcgtaacaccatatttgagtggttgaagtaccatattgatatt 28855283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 9180256 - 9180355
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    ||||| |||||| ||||||| ||| ||||||||||||  ||||| ||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  9180256 ttctgccccttcggaattaagagtgttcttaagacca--tagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaaaaaaatagtccct 9180353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 28855650 - 28855544
Alignment:
Q  290 ttcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtctt-aagagtatagtcccttcaattatttatgtctttttagaa 388  Q
    ||||||||||||  |||||||| ||  || |||||||| ||| |||  |||||||||||| ||||| |||||||||||||||   |||| || |||||||    
T  28855650 ttcttaagacca--tagtccctattcagtttattgtcctttcaaaaataagaatggtctttaagagcatagtcccttcaatt---tatgcctctttagaa 28855556  T
Q  389 taaataatattt 400  Q
    ||||||||||||    
T  28855555 taaataatattt 28855544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 1934522 - 1934675
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| || |||| ||| ||||||||||||  ||||| ||||| ||| |  |||||||||| ||| |||||||||||||| |  |||||||||    
T  1934522 ttctgtcccttcggatttaagagtgttcttaagacca--tagtcgcttttcggtttcatgtcccttcggaattaagaatggtcttaaaaacatagtccct 1934619  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    || || |   |||||  || |||||||| |||| ||||||||||||| ||||| |||||    
T  1934620 tcgataa---atgtcccttcagaataaagaatacttttaagatcatagtccctatttgg 1934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 422
Target Start/End: Original strand, 19891961 - 19892155
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttc-tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       |||||||  |||| |||| ||||||| ||| ||||||||| ||  ||||||||||| ||| || |||    
T  19891961 cgacttgtgttgacaagtccttctcctttttctactcctttatgtcgcttcggaattaagagtgttcttaagatca--tagtcccttttcggtttaatgt 19892058  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    ||||||  ||| |||||||||||||| |  ||||||| ||| || || ||||||  || |||||||| | || ||||||||||||| ||||| |||||    
T  19892059 cccttcagaattaagaatggtcttaa-aacatagtccattcgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttgg 19892155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 9184950 - 9185046
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||||| ||| ||| ||| ||||||||||||  ||||| ||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||||    
T  9184950 tgtcccttcggaaataagagtgttcttaagacca--tagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttc 9185046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 17255011 - 17255057
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||| |||||||||||||| ||||||||||||||||  |||||||||    
T  17255011 tataatgtcccttcgaaattaagaatggtcttaagaacatagtccct 17255057  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 529
Target Start/End: Original strand, 38427170 - 38427254
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactgata 529  Q
    |||||||||| ||| ||||| | |||||  ||| ||||||||||| ||||||||||||| |||||  ||||||| |||| |||||    
T  38427170 atatattcttattcgattctgggagaaggtagaggttagaatggtggtagcaccatattagagtggctgaaatatcatattgata 38427254  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 29678131 - 29678068
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||| |||||  ||||||||| |||| ||||||||||||||| |||  ||||||||||||||    
T  29678131 atatattattcttggattcttgaaaaagttagatgttagaatggt-gtaaaaccatatttgagtg 29678068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 269 - 497
Target Start/End: Complemental strand, 83595 - 83365
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||||| ||||||| ||| |||||||||||| ||||||||||| | ||||||||||||||||  ||||||||| ||||||||||| |||||||||||    
T  83595 tgtcccttcggaattaagagtgttcttaagaccatatagtccctttgtcggtatattgtcccttcagaatcaagaacggtcttaagagcatagtcccttc 83496  T
Q  367 aattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattct 466  Q
    ||| |||||| || |||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  83495 aataatttatatccttttagaataaataatattttaagatcatagtccattttcggtataataagaatgatcttaaacatatatattcttcttcaattct 83396  T
Q  467 tgaagaagtaagatgttagaatggtcgtagc 497  Q
    ||||||||| |||||||| ||||||||||||    
T  83395 tgaagaagttagatgttataatggtcgtagc 83365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 228 - 452
Target Start/End: Complemental strand, 81397 - 81174
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||||||| ||| |||||||||||| |||||||||| |  |||||||||    
T  81397 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagaccatatagtcccttgtccgtatattgt 81298  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| |||||| |||| ||||||||| ||| |||||||||| ||||||||| ||||||||||   ||||||||||||| ||| ||| |||| |||||    
T  81297 cccttcggaatcaataatgatcttaagagcataatcccttcaataatttatgtccttttagaata---aatattttaagattatagtccattttcggtat 81201  T
Q  426 aataaaaatgatcttaaacatatatat 452  Q
    ||||| |||||||||||| ||||||||    
T  81200 aataagaatgatcttaaatatatatat 81174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 228 - 511
Target Start/End: Original strand, 9393 - 9675
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||| |||||||||||| ||||||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  9393 cgacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagac--catagtcccttttcggtttaatgt 9490  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    || |||| ||| ||||||||||||||||| ||||||||||| || ||| || ||| ||| ||||||||||| ||||||||||||| |||||||| |||||    
T  9491 ccattcggaattaagaatggtcttaagagcatagtcccttcgataattcat-tctctttggaataaataatgttttaagatcatagtcccttttcggtat 9589  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  9590 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 9675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 266 - 510
Target Start/End: Complemental strand, 8888473 - 8888231
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| ||||||||||||||||| |||||||||    
T  8888473 ttctgtcccttcagaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtccct 8888376  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaatt 464  Q
    || || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| |    
T  8888375 tcgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcggtataataagaatgatcttaaacatatatattcttcttcaact 8888277  T
Q  465 cttgaagaagtaagatgttagaatggtcgtagcaccatatttgagt 510  Q
    | || |||||| ||||||||||||||||||||||||||||||||||    
T  8888276 catggagaagttagatgttagaatggtcgtagcaccatatttgagt 8888231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 3034225 - 3033943
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||| |||||||||||| ||||||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  3034225 cgacttgtgttgacaagttcttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagac--catagtcccttttcggtttaatgt 3034128  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| |||||||||||||| || ||||||||||| || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  3034127 cccttcggaattaagaatggtcttaacagcatagtcccttcgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 3034029  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  3034028 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 3033943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 3693200 - 3692918
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttc-tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       |||||||| ||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||    
T  3693200 cgacttgtgttgacaagttcttctcctttttctactccttcctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgt 3693103  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| |||||||||||||| || ||||||||||| || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  3693102 cccttcggaattaagaatggtcttaacagcatagtcccttcgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 3693004  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  3693003 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 3692918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 269 - 511
Target Start/End: Original strand, 6595908 - 6596150
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| ||||||| ||||||||||||| || ||||||||||   |||||||||||| |||| |||||||||||| |||||||| |||||||||||     
T  6595908 tgtcccttcggaattaagagtattcttaagatcatatagtcccttgccggtatattgtcctttcggaatcaagaatgggcttaagagcatagtcccttcg 6596007  T
Q  368 attatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattctt 467  Q
    || ||| || ||| ||  |||||||||| ||||||| |||||| || |||||||||||||||| |||||||||||||| |||||||||| |||||||| |    
T  6596008 ataattcat-tctcttaggaataaataaaattttaaaatcatagtctctttttggtataataagaatgatcttaaacaaatatattcttattcaattcat 6596106  T
Q  468 gaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    | |||||| |||||||||||||||||||||||||||||||||||    
T  6596107 ggagaagttagatgttagaatggtcgtagcaccatatttgagtg 6596150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 3673168 - 3672886
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttct-gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| ||| |||||||       ||||||||| |||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||    
T  3673168 cgacttgtgttgacaagttcttctcctttttctactccttcttgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgt 3673071  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    ||||||| ||| |||||||||||||| || ||||||||||  || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| | |||    
T  3673070 cccttcggaattaagaatggtcttaacagcatagtccctttgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcgatat 3672972  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||    
T  3672971 aataagaatgatcttaaacatatatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtg 3672886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 266 - 511
Target Start/End: Complemental strand, 8070221 - 8069978
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| || |||||||||    
T  8070221 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtccct 8070124  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaatt 464  Q
    || || ||| || ||| ||  ||||||||||| ||||||||||||| || ||||| | |||||||| ||||||||||||||||||||||||||||||| |    
T  8070123 tcgataattcat-tctcttcggaataaataatgttttaagatcatagtcgcttttcgatataataagaatgatcttaaacatatatattcttcttcaact 8070025  T
Q  465 cttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    | || |||||| |||||||||||||||||||||||||||||||||||    
T  8070024 catggagaagttagatgttagaatggtcgtagcaccatatttgagtg 8069978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 266 - 511
Target Start/End: Complemental strand, 8883713 - 8883470
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| || |||||||||||||| ||||| |||    
T  8883713 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaaaaatggtcttaagagcatagtacct 8883616  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaatt 464  Q
    || || ||| || ||| ||  ||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||| |    
T  8883615 tcgataattcat-tctcttcggaataaataatgttttaagatcatagtcccttttcggtataataagaatgatcttaaacatatacattcttcttcaact 8883517  T
Q  465 cttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    | || |||||| |||||||||||||||||||||||||||||||||||    
T  8883516 catggagaagttagatgttagaatggtcgtagcaccatatttgagtg 8883470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 266 - 491
Target Start/End: Original strand, 45904097 - 45904319
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||| |  | ||| || | ||| |||| ||  ||||||||||||||||| |||||||||    
T  45904097 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccatcgtcggtttactatcctttcggaaataagaatggtcttaagagcatagtccct 45904194  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtataataaaaatgatcttaaacatatatattcttcttcaatt 464  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  ||| |||| ||||||||||| ||||||||||  ||||||||||||||||||||    
T  45904195 tcaattatttatgtctctttagaataaataatattttaagatcatggtccattttcggtataataaagatgatcttaa--atatatattcttcttcaatt 45904292  T
Q  465 cttgaagaagtaagatgttagaatggt 491  Q
    |||| ||||||  ||||||||||||||    
T  45904293 cttggagaagttggatgttagaatggt 45904319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 228 - 491
Target Start/End: Original strand, 10585702 - 10585964
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||| ||||||       ||||| |||||||||||| ||||||| ||| || |||||||  |||||||| |  | ||| |||| |    
T  10585702 cgacttgtgttgacaagtcgttctcctttttctactcctttctgtcccttcggaattaagagtgtttttaagac--catagtccatcatcggtttattat 10585799  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggta 424  Q
    || |||| ||  ||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||| ||||    
T  10585800 cctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtctcattagaataaataatattttaagatcatggtccctttttcggta 10585899  T
Q  425 taataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||| ||||||||||  ||||| |||||||||||||||||| ||||||  ||||||||||||||    
T  10585900 taataaagatgatcttaa--atatacattcttcttcaattcttggagaagttggatgttagaatggt 10585964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 302 - 511
Target Start/End: Complemental strand, 53358605 - 53358397
Alignment:
Q  302 catagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatatttt 401  Q
    |||||||| |||| ||| |||||||| |||| ||  ||||||||||||||||| ||||||| ||||||||| ||||| | |||| ||||||||||||||     
T  53358605 catagtcctttttcggtttattgtcctttcgcaactaagaatggtcttaagagcatagtcctttcaattatatatgtttctttataataaataatatttg 53358506  T
Q  402 aagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcacc 500  Q
    ||||||||  ||||||||| |||||||||| |||||| ||||  | ||||| |||||||||||||||| | |||| ||| ||||||||||| ||| || |    
T  53358505 aagatcatggtccctttttcggtataataagaatgatattaa--aaatatactcttcttcaattcttggaaaagttagacgttagaatggtagtaacaac 53358408  T
Q  501 atatttgagtg 511  Q
    |||||||||||    
T  53358407 atatttgagtg 53358397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 311 - 473
Target Start/End: Complemental strand, 28125627 - 28125467
Alignment:
Q  311 tttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcata 410  Q
    |||| |||||||||||  |||| ||| ||||||||||||||||| ||||||| |||||||| |||||||| || |||||||||||||| |||||||||||    
T  28125627 ttttcggtatattgtcatttcggaattaagaatggtcttaagagcatagtcctttcaattaattatgtctcttaagaataaataatatcttaagatcata 28125528  T
Q  411 atccctttttggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaa 473  Q
     |||  ||| |||||||||| ||||| |||||  | |||||||||||||||||||||||||||    
T  28125527 gtccactttcggtataataagaatgagcttaa--aaatatattcttcttcaattcttgaagaa 28125467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 49019873 - 49019804
Alignment:
Q  341 aatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcata 410  Q
    |||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  49019873 aatggtcttaggagtatagtcccttcaattatttatgtccctttaaaataaataatattttaagatcata 49019804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 14438188 - 14438326
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       ||||| |||||||||||| ||| ||| ||||||||||||||  ||||||||||||| ||| || |||    
T  14438188 cgacttgtgttgacaagtccttctcctttttctactcctttctgtcccttcggaaataagagtattcttaagac--catagtcccttttcggtttaatgt 14438285  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    ||||||| ||| |||||||||||||| |  |||||||||||    
T  14438286 cccttcggaattaagaatggtcttaaaaacatagtcccttc 14438326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 12900670 - 12900745
Alignment:
Q  342 atggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctt 417  Q
    ||||||||||||| ||||| |||| |||||||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  12900670 atggtcttaagagcatagttccttgaattatttatgtttctttagaaaaaataatattttaagatcatagtccctt 12900745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 450
Target Start/End: Original strand, 35456539 - 35456674
Alignment:
Q  316 ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccc 415  Q
    |||||| |||||||||| ||| ||||||||||||||||| ||| || |||  ||  ||||||||   | | |||||||||||||||||||||||| ||      
T  35456539 ggtataatgtcccttcggaattaagaatggtcttaagagcataatctctttgatagtttatgtcccatcaaaataaataatattttaagatcatagtctt 35456638  T
Q  416 ttttt-ggtataataaaaatgatcttaaacatatat 450  Q
    ||||| |||||||||| |||||||||||| ||||||    
T  35456639 tttttcggtataataagaatgatcttaaaaatatat 35456674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 415
Target Start/End: Complemental strand, 18011832 - 18011734
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccc 415  Q
    |||||||||||||||||||||| ||||||||||| |  ||||||||||| || |||||||||  || | ||||||||||| |||||||| |||||||||    
T  18011832 tatattgtcccttcgaaatcaaaaatggtcttaaaaacatagtcccttcgataatttatgtcgcttcaaaataaataatatttttaagaccataatccc 18011734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 23665652 - 23665805
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| || |||| ||| ||||||||||||  ||||| ||||||||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  23665652 ttctgtcccttcggatttaagagtgttcttaagacca--tagtcgctttttggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 23665749  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    || || |   |||||  || |||||||| |||| ||||||||||||| ||||| |||||    
T  23665750 tcgataa---atgtcccttcagaataaagaatacttttaagatcatagtccctatttgg 23665805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 757893 - 758050
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| || |||| ||| ||||||||||||  |||||||||||| ||| || |||||||||| ||| |||||||||||||| |  ||||||||    
T  757893 ttctgtcccttcggatttaagagtgttcttaagacca--tagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccc 757990  T
Q  364 ttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    ||| || || ||||||  || ||| |||| | || ||||||||||||| ||||| |||||    
T  757991 ttcgataatatatgtcccttcagattaaagagtacttttaagatcatagtccctatttgg 758050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 18467792 - 18467632
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||| ||| ||| ||||||||| ||  ||||||||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  18467792 ttctgtcccttcggaaataagagtgttcttaagatca--tagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccct 18467696  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| ||||    
T  18467695 tcgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttggaataa 18467632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 7570745 - 7570844
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| || |||| ||| ||||||||||||  |||||||||||| ||| || |||||||||||||| |||||||||||||| |  ||||||||    
T  7570745 ttctgtcccttcggatttaagagtgttcttaagacca--tagtccctttttcggtttaatgtcccttcgaaattaagaatggtcttaaaaacatagtccc 7570842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 427
Target Start/End: Complemental strand, 18472613 - 18472414
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||  |||||||||||       ||||| |||| ||||||| ||| ||| ||| ||||||||||  ||||||||||||| ||| || |||    
T  18472613 cgacttgtgttgataagtccttctcctttttctactcctttctatcccttcagaaataagagtgttcttaagac--catagtcccttttcggtttaatgt 18472516  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||  ||| |||||||||||||| |  ||||||||||| || || ||||||  ||||||||||| | || ||||||||| ||| ||||| ||||| |    
T  18472515 cccttcagaattaagaatggtcttaa-aacatagtcccttcgataatatatgtccctttagaataaagagtacttttaagatgatagtccctatttggaa 18472417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 427
Target Start/End: Original strand, 39775216 - 39775415
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactccttc-tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||||||||||       |||||||  ||||||||| ||||||| ||| || |||||||||  ||||||||||| ||| || |||    
T  39775216 cgacttgtgttgacaagtccttctcctttttctactcctttatgtcccttcggaattaagagtgttattaagacca--tagtcccttttgggtttaatgt 39775313  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggta 424  Q
    ||||||| ||| |||||||||||||| |  ||||||| | | || || ||||||  || |||||||||| || ||||||||||||| || || ||||| |    
T  39775314 cccttcggaattaagaatggtcttaa-aacatagtccttgcgataatatatgtcccttcagaataaatagtacttttaagatcatagtctctatttggaa 39775412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 427
Target Start/End: Original strand, 2207331 - 2207435
Alignment:
Q  323 tgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttg 421  Q
    |||||||||||||| |||||||||||||| || |||||||||||||| || ||||||| ||  ||||||| | || ||||||||||||  ||||| ||||    
T  2207331 tgtcccttcgaaattaagaatggtcttaa-agcatagtcccttcaataatatatgtctcttcggaataaagagtacttttaagatcatggtccctgtttg 2207429  T
Q  422 gtataa 427  Q
    | ||||    
T  2207430 gaataa 2207435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 12965416 - 12965577
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| | | |||| |||||||  || |||||||| ||| || |||||||||||||| |||||||||||||||   |||||||||    
T  12965416 ttctgtcccttcggaattaagaatgttctgaagacca--tactcccttttcggtttaatgtcccttcgaaattaagaatggtcttaagttcatagtccct 12965513  T
Q  365 tcaat-tatttatgtctttttagaataaataatattttaagatcataatccctttttggtataat 428  Q
    ||  | | ||||| ||  ||  |||||||||||| |||||||||||| ||||||||  |||||||    
T  12965514 tcggtatttttatatc-attcggaataaataataatttaagatcatagtcccttttcagtataat 12965577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 422
Target Start/End: Original strand, 24037900 - 24038053
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| || |||| ||| ||||||||||||  ||||| ||||| ||| || |||||||||| ||| |||||||||||||| |  |||||||||    
T  24037900 ttctgtcccttcggatttaagagtgttcttaagacca--tagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtccct 24037997  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    || || |   |||||  || |||||||| |||| ||||||||||||| ||||| |||||    
T  24037998 tcgataa---atgtcccttcagaataaagaatacttttaagatcatagtccctatttgg 24038053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 19339822 - 19339739
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatatttt 401  Q
    |||||||||||||| |||| |||||||||||||| |  ||||| | |||||| |||||||||  || | |||||||||||||||    
T  19339822 tatattgtcccttcaaaattaagaatggtcttaaaaccatagttcattcaataatttatgtcgcttcaaaataaataatatttt 19339739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 27709497 - 27709398
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    ||||||||||||  |||||| ||| ||||||||||||  |||| |||||||||| || |||| ||||| ||| |||||||||||||| |  |||||||||    
T  27709497 ttctgtcccttcgaaattaagagtgttcttaagacca--tagttcctttttggtttaatgtctcttcggaattaagaatggtcttaaaaacatagtccct 27709400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 427
Target Start/End: Complemental strand, 29350772 - 29350647
Alignment:
Q  302 catagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttt 400  Q
    ||||||||||||| ||| || |||||||| | ||| || ||||||||||| |  ||||||||||| || || ||||||  || |||||||| |||| |||    
T  29350772 catagtcccttttcggtttaatgtccctttggaattaataatggtcttaa-aacatagtcccttcgataatatatgtcccttcagaataaagaatatttt 29350674  T
Q  401 taagatcataatccctttttggtataa 427  Q
    |||||||||| ||||| ||||| ||||    
T  29350673 taagatcatagtccctatttggaataa 29350647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 422
Target Start/End: Original strand, 23660997 - 23661146
Alignment:
Q  270 gtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaa 368  Q
    |||||||| || |||| ||| ||||||||||||  ||||| ||||| ||| || |||||||||| ||| |||||||||||||| |  ||||||||||| |    
T  23660997 gtcccttcggatttaagagtgttcttaagacca--tagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcga 23661094  T
Q  369 ttatttatgtctttttagaataaataata-ttttaagatcataatccctttttgg 422  Q
    | |   |||||  || |||||||| |||| ||||||||||||| ||||| |||||    
T  23661095 taa---atgtcccttcagaataaagaatacttttaagatcatagtccctatttgg 23661146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 20520519 - 20520438
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaa 351  Q
    ||||||||| ||||||| ||| ||||||||||||  ||||||||||| ||| || |||||||||| ||| ||||||| ||||||    
T  20520519 tgtcccttcggaattaagagtgttcttaagacca--tagtcccttttcggtttaatgtcccttcggaattaagaatgatcttaa 20520438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 48431937 - 48431985
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttc 366  Q
    |||| |||||||||||||| ||||||||||||||||  |||||||||||    
T  48431937 tataatgtcccttcgaaattaagaatggtcttaagaacatagtcccttc 48431985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 527
Target Start/End: Original strand, 13166865 - 13166947
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactga 527  Q
    |||||||||||||| ||||||| |||||| | |||||| |||| | ||| |||| ||||| ||||  ||||||||||||||||    
T  13166865 atatattcttcttcgattcttggagaagttatatgttataatgattgtaacaccctatttaagtggttgaaataccatactga 13166947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 3656761 - 3656840
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtct 348  Q
    ||||||||| ||||||| ||| ||||||||||||  |||||||||||| ||| || ||||||||||||||  ||||||||||    
T  3656761 tgtcccttcggaattaagagtgttcttaagacca--tagtccctttttcggtttaatgtcccttcgaaattcagaatggtct 3656840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 421
Target Start/End: Original strand, 17025680 - 17025786
Alignment:
Q  316 ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata-ttttaagatcataatcc 414  Q
    |||||||| |||||||||||| ||||| | ||||||||  ||||| ||||| || || ||||||  || |||||||| | || |||||||| |||| |||    
T  17025680 ggtatattatcccttcgaaattaagaaagttcttaagaacatagttccttcgataatatatgtcccttcagaataaaaagtatttttaagaccatagtcc 17025779  T
Q  415 ctttttg 421  Q
    |||||||    
T  17025780 ctttttg 17025786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 11997693 - 11997734
Alignment:
Q  354 gtatagtcccttcaattatttatgtctttttagaataaataa 395  Q
    ||||||||  ||||||||||||||||| ||||||||||||||    
T  11997693 gtatagtcttttcaattatttatgtctctttagaataaataa 11997734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 35457695 - 35457638
Alignment:
Q  454 cttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||| |||||||||  |||| | ||||||||||||||| ||| |||||||||||||||    
T  35457695 cttcatcaattcttacagaaattagatgttagaatggtggtaacaccatatttgagtg 35457638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 55326342 - 55326183
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| ||||||||||||  ||||| ||||| |||  | ||||| |||| ||| |||||||||||||| |  ||| |||||    
T  55326342 ttctgtcccttcggaattaagagtgttcttaagacca--tagtcgcttttcggttgaatgtcc-ttcggaattaagaatggtcttaaaac-ataatccct 55326247  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || || ||||||  || |||||||| | || ||||||||||||| ||||| ||||| ||||    
T  55326246 tcgataatatatgtcccttcagaataaagagtacttttaagatcatagtccctatttggaataa 55326183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 228 - 511
Target Start/End: Original strand, 52429 - 52712
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcc-ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||| ||||||       ||||| |||||||||||| ||||||| ||| ||||||||||  |||||||| |  | ||| |||| |    
T  52429 cgacttgtgttgacaagtcgttctcctttttctactcctttctgtcccttcagaattaagagtgttcttaagac--catagtccatcgtcggtttattat 52526  T
Q  326 cccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggtat 425  Q
    || |||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||| |||| |||||    
T  52527 cctttcggaaataagaatggtcttaagagtatagtcccttcaattatttatgtctctttagaataaataatattttaagatcatggtccgttttcggtat 52626  T
Q  426 aataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||| ||||| ||  | ||||| || ||||||||||||||| |||||| ||||||||||||||| |||  | ||||||||||||    
T  52627 aataaagatgattttttaaatataaatacttcttcaattcttggagaagttagatgttagaatggtagtaatatcatatttgagtg 52712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 228 - 431
Target Start/End: Original strand, 47485 - 47688
Alignment:
Q  228 cgacttgtgttgacgagtccttctccnnnnnnnactcctt-ctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgt 325  Q
    |||||||||||||| |||| ||||||       ||||||| |||||||||| ||||||| ||| ||||||||||||  |||||| |  | ||| |||| |    
T  47485 cgacttgtgttgacaagtcgttctcctttttctactcctttctgtcccttcggaattaagagtgttcttaagacca--tagtccatcgtcggtttattat 47582  T
Q  326 cccttc-gaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctttttggta 424  Q
    || ||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||   || |||| ||||    
T  47583 cctttcagaaat-aagaatggtcttaagagcatagccccttcaattatttatgtctctttagaataaataatattttaagatcatggacctttttcggta 47681  T
Q  425 taataaa 431  Q
    |||||||    
T  47682 taataaa 47688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 266 - 491
Target Start/End: Original strand, 792 - 1015
Alignment:
Q  266 ttctgtcccttctgaattaaa-gtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| |||||||| || ||||||||| ||  |||||| |  | ||| |||| ||| |||||||  ||||||||||||||||| |||||||||    
T  792 ttctgtcccttcggaattaaaagtgttcttaagatca--tagtccatcgtcggtttattatcctttcgaaaataagaatggtcttaagagcatagtccct 889  T
Q  365 tcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaat 463  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||||| ||||||||||  |||||||||||||||||||    
T  890 tcaattatttatgtctctttagaataaataatattttaagatcatggtccctttttcgttataataaagatgatcttaa--atatatattcttcttcaat 987  T
Q  464 tcttgaagaagtaagatgttagaatggt 491  Q
    ||||| |||| |  ||||||||||||||    
T  988 tcttggagaatttggatgttagaatggt 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 341 - 491
Target Start/End: Original strand, 35330 - 35479
Alignment:
Q  341 aatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatgatct 439  Q
    |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||    
T  35330 aatggtcttaagagcatagtcccttcaattatttatgtatgtttagaataaataatattttaagatcatggtccctttttcggtataataaagatgatct 35429  T
Q  440 taaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    |||  |||||||||||||||||||||||| ||||||  ||||||| ||||||    
T  35430 taa--atatatattcttcttcaattcttggagaagttggatgttaaaatggt 35479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 338 - 491
Target Start/End: Complemental strand, 46250 - 46098
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatga 436  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||| ||||||||||| ||||    
T  46250 aagaatggtcttaagaccatagtcccttcaattatttatgtctctttagaataaataatgttttaagatcatggtccctttttcggtataataaagatga 46151  T
Q  437 tcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||  |||||||||||||||||||||||  ||||||   |||||||||||||    
T  46150 tcttaa--atatatattcttcttcaattcttagagaagttgtatgttagaatggt 46098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 338 - 491
Target Start/End: Original strand, 152537 - 152689
Alignment:
Q  338 aagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataataaaaatga 436  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||| ||||||||||| ||||    
T  152537 aagaatggtcttaagaccatagtcccttcaattatttatgtctctttagaataaataatgttttaagatcatggtccctttttcggtataataaagatga 152636  T
Q  437 tcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggt 491  Q
    ||||||  |||||||||||||||||||||||  ||||||   |||||||||||||    
T  152637 tcttaa--atatatattcttcttcaattcttagagaagttgtatgttagaatggt 152689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 7673 - 7513
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||||||||||| ||||||| ||| || |||||||||  ||||||||||| ||| || |||||||||||||| |||||||||||||| |  |||||||||    
T  7673 ttctgtcccttcggaattaagagtgttattaagacca--tagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa-aacatagtccct 7577  T
Q  365 tcaattatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || || ||||||| || |||||||| | || ||||||||||||| ||||| ||||| ||||    
T  7576 tcgataatatatgtctcttcagaataaagagtacttttaagatcatagtccctatttggaataa 7513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 261 - 450
Target Start/End: Complemental strand, 6936 - 6748
Alignment:
Q  261 actccttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatag 359  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||  || ||||| ||  || || ||||| |||  ||   |||||||| ||||||| ||||    
T  6936 actccttctgtcccttcggaattaagagtgttcttaagacca--taatccctcttctgtttaatgtcctttcagaacatagaatggttttaagagcatag 6839  T
Q  360 tcccttcaattatttatgtctttttagaataaataatattttaagatcataatccctt-tttggtataataaaaatgatcttaaacatatat 450  Q
    || ||||| || ||||||||| |||||||||||||| |||||||||||||  |||||| || ||||| |||| ||||||||| || ||||||    
T  6838 tctcttcattt-tttatgtctctttagaataaataacattttaagatcatggtcccttgttcggtatgataagaatgatcttgaaaatatat 6748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 145958 - 146102
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtcccttttt-ggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| ||||||| ||| ||||||||| ||  |||||||||||| |||||| ||||| ||| |||  ||||||||| ||||||| ||||||||    
T  145958 ttctgtcccttcggaattaagagt-ttcttaagagca--tagtccctttttcggtataatgtccattcaaaaataagaatggttttaagagcatagtccc 146054  T
Q  364 ttcaat-tatttatgtctttttagaataaataatattttaagatcata 410  Q
    ||| || | |||||||| ||| |||||| |||||||||||||||||||    
T  146055 ttcgatatttttatgtcctttcagaatatataatattttaagatcata 146102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 511
Target Start/End: Original strand, 146143 - 146218
Alignment:
Q  434 tgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    |||||||||| ||| ||  |||||||||||| ||  |||||| |||||||| |||||| |||||||||||||||||||    
T  146143 tgatcttaaaaataaat--tcttcttcaatttttcgagaagttagatgttaaaatggtggtagcaccatatttgagtg 146218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 256319 - 256226
Alignment:
Q  304 tagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaataaataata 397  Q
    ||||||||||| ||| ||||||||||||  ||| ||||||||| ||||| | | | ||||||||||||||||||||| || |||||||||||||    
T  256319 tagtcccttttcggtttattgtcccttcagaataaagaatggtattaagtgcacattcccttcaattatttatgtctcttcagaataaataata 256226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 523
Target Start/End: Complemental strand, 256224 - 256113
Alignment:
Q  412 tcccttttt-ggtataataaaaatgatcttaaacatatatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagt 510  Q
    ||||||||| |||||||||| ||||||||||||  |||||  |||||||| ||||||  ||| || | |||||||||||||  || ||| ||||||||||    
T  256224 tccctttttcggtataataagaatgatcttaaaagtatat--tcttcttcgattcttagagatgttacatgttagaatggtgataacactatatttgagt 256127  T
Q  511 -gtgaaataccata 523  Q
     || ||||||||||    
T  256126 ggttaaataccata 256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 511
Target Start/End: Complemental strand, 4630 - 4374
Alignment:
Q  266 ttctgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatat-tgtcccttcgaaatcaagaatggtcttaagagtatagtccc 363  Q
    |||||||||||| ||||||| ||| ||||||||||||  |||||||| || ||| ||  |||||||||| ||| |||||||||||||||   ||||||||    
T  4630 ttctgtcccttcggaattaagagtgttcttaagacca--tagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtccc 4533  T
Q  364 ttcaat-tatttatgtctttttagaataaataatattttaagatcataatcccttttt-ggtataat----------aaa----aatgatcttaaacata 447  Q
    ||| || | |||||||| ||   |||||||||||| |||||||||||| ||||||||| |||| |||          |||    ||||||||||||   |    
T  4532 ttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtccctttttcggtacaatgccccttcaaaaatatgaatgatcttaaa---a 4437  T
Q  448 tatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg 511  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||| |||  ||||||||||||||    
T  4436 tatattcttcttcgattcttgaagaagttagacgttagaatggt-gtaaaaccatatttgagtg 4374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 427
Target Start/End: Original strand, 443475 - 443632
Alignment:
Q  269 tgtcccttctgaattaa-agtattcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttca 367  Q
    ||||||||| ||||||| ||| ||||||||||||  |||||||||||  || || ||| |||||| ||| |||||||||||||| |  |||||||||||     
T  443475 tgtcccttcggaattaatagtgttcttaagacca--tagtcccttttcagtttaatgttccttcggaattaagaatggtcttaa-aacatagtcccttcg 443571  T
Q  368 attatttatgtctttttagaataaataata-ttttaagatcataatccctttttggtataa 427  Q
    || || ||||||  || |||||||| | || |||||| |||||| ||||| ||||| ||||    
T  443572 ataatatatgtcccttcagaataaagagtacttttaaaatcatagtccctatttggaataa 443632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 527
Target Start/End: Complemental strand, 140123 - 140041
Alignment:
Q  447 atatattcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccatactga 527  Q
    |||||||||||||| ||||||| |||||| | |||||| |||| | ||| |||| ||||| ||||  ||||||||||||||||    
T  140123 atatattcttcttcgattcttggagaagttatatgttataatgattgtaacaccctatttaagtggttgaaataccatactga 140041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 430
Target Start/End: Complemental strand, 25997 - 25858
Alignment:
Q  290 ttcttaagaccacatagtccctttttggtatattgtcccttcgaaatcaagaatggtcttaagagtatagtcccttcaattatttatgtctttttagaat 389  Q
    ||||||||||||  ||||||||||| ||| || |||||||||||||| |||||||||||||| |  ||||||||||| || || || |||  ||  ||||    
T  25997 ttcttaagacca--tagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaaaaacatagtcccttcgataatataagtcccttcggaat 25900  T
Q  390 aaataat-attttaagatcataatccctttttggtataataa 430  Q
    ||| | |  | ||||||||||| ||||||||||| |||||||    
T  25899 aaagagtgctattaagatcatagtccctttttggaataataa 25858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 5264 - 5190
Alignment:
Q  451 attcttcttcaattcttgaagaagtaagatgttagaatggtcgtagcaccatatttgagtg--tgaaataccata 523  Q
    |||||||||| ||| || ||||||| |||||||||||||||  |||||||| |||||||||  ||||||||||||    
T  5264 attcttcttcgattattaaagaagttagatgttagaatggtattagcaccaaatttgagtgtttgaaataccata 5190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 5897 - 5943
Alignment:
Q  318 tatattgtcccttcgaaatcaagaatggtcttaagagtatagtccct 364  Q
    |||| |||||||||||||| ||||||||||||||||  |||||||||    
T  5897 tataatgtcccttcgaaattaagaatggtcttaagaacatagtccct 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 164895 - 164951
Alignment:
Q  160 atcccgatgaaccagtattgaaagaaaatgacaatgtttgagaattgattatgaact 216  Q
    ||||| |||||||| |||  ||||||| |||||||||||| ||||||||| ||||||    
T  164895 atcccaatgaaccaatatctaaagaaattgacaatgtttgggaattgattctgaact 164951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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