View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19263_low_1 (Length: 584)
Name: NF19263_low_1
Description: NF19263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19263_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Complemental strand, 4368682 - 4368114
Alignment:
| Q |
18 |
atgcatcacacgcttttccataatcatcctcaccaatttcgatcctagaacactcaccatgcctactcattcccctgtaactttttacctacctactcat |
117 |
Q |
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| T |
4368682 |
atgcatcacacgcttttccataatcatcctcaccaatttcgatcctagaacactcaccatgcctactcattcccctgtaactttttacctacctactcat |
4368583 |
T |
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| Q |
118 |
ttttcttcatttcattactttataattattcacatgtattgatttcaagaatgtttaattgtgaaactggattttgttttttgactgtacaggatgtatc |
217 |
Q |
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| T |
4368582 |
ttttcttcatttcattactttataattattcacatgtatt----------------------gaaactggattttattttttgactgtacaggatgtatc |
4368505 |
T |
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| Q |
218 |
tacaggaataggggagtgtttctatgcagctttgatgccactcatagctgtctttgaggttttggtctttgctgtcacaggttgtttcaattctcatctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368504 |
tacaggaataggggagtgtttctatgcagctttgatgccactcatagctgtctttgaggttttggtctttgctgtcacaggttgtttcaattctcatctt |
4368405 |
T |
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| Q |
318 |
cccaattttcacactcaaaaatctgcttatacttctaaagacttcatacgccttgctcaagaaaccagatgtaattactcatttcaatacaatactgttt |
417 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368404 |
cccaattttcacactcaaaaatctgcttatactgctaaagacttcatacgccttgctcaagaaaccagatgtaattactcatttcaatacaatactgttt |
4368305 |
T |
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| Q |
418 |
caattc--------------tatcctcagtaaaatagtaaacaatggcttagtgcattttcggattgactgttgaaaccggtgaaatcatggcaggttac |
503 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368304 |
caattcttactttttttttttatcctcagtaaaatagtaaacaatggcttagtgcattttcggattgactgttgaaaccggtgaaatcatggcaggttac |
4368205 |
T |
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| Q |
504 |
---------------------tgtgattctgtagacaagttatatccaacaatatgctgtaggtgtttgttgttatttgataatgatgatg |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368204 |
tgtgattctgtcaaattcttgtgtgattctgtagacaagttatatccaacaatatgctgtaggtgtttgttgttatttgataatgatgatg |
4368114 |
T |
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