View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19263_low_3 (Length: 544)
Name: NF19263_low_3
Description: NF19263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19263_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 16 - 528
Target Start/End: Original strand, 22902338 - 22902850
Alignment:
| Q |
16 |
atccataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaattaatgtaaacattgaaataaagt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22902338 |
atccataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaagtaatgtaaacattgaaataaagt |
22902437 |
T |
|
| Q |
116 |
tcattaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgtcacattgaaattactac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
22902438 |
tcattaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgttacattgaaattactac |
22902537 |
T |
|
| Q |
216 |
gcggatcactatccgagttcatctcggttaaagtaccatagacactaggtggagcaatattttctgttgcacccccctttgcatatttaacagcacctat |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22902538 |
gcggatcaccatccgagttcatctcggttaaagtaccatagacactaggtggagcaatattttctgttgcacccccctttgcatatttaacagcacctat |
22902637 |
T |
|
| Q |
316 |
acttgaaaaattagtagcaaggttaggttgtatcaggaagcttgtatctggaacccaagttcgatgaagcgggtcaacactagaggaaacacttggacca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22902638 |
acttgaaaaattagtagcaaggttaggttgtatcaggaagcttgtatctggaacccaagttcgatgaagcgggtcaacactagaggaaacacttggacca |
22902737 |
T |
|
| Q |
416 |
cccatgttaagcctaaaaaccgtctcaaatgcatctgtcaacaaccctgtgtactctcttcgcggattcaaggcgatagcatcatcggcaattaggtcgt |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22902738 |
cccatgttaagcctaaaaaccgtctcaaatgcatctgtcaacaaccctgtgtactctcttcgcggattcaaggcgatagcatcatcggcaattaggtcgt |
22902837 |
T |
|
| Q |
516 |
caggcacagaaac |
528 |
Q |
| |
|
||||||||||||| |
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| T |
22902838 |
caggcacagaaac |
22902850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 16 - 528
Target Start/End: Original strand, 22954006 - 22954518
Alignment:
| Q |
16 |
atccataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaattaatgtaaacattgaaataaagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22954006 |
atccataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaagtaatgtaaacattgaaataaagt |
22954105 |
T |
|
| Q |
116 |
tcattaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgtcacattgaaattactac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
22954106 |
tcattaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgttacattgaaattactac |
22954205 |
T |
|
| Q |
216 |
gcggatcactatccgagttcatctcggttaaagtaccatagacactaggtggagcaatattttctgttgcacccccctttgcatatttaacagcacctat |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22954206 |
gcggatcaccatccgagttcatctcggttaaagtaccatagacactaggtggagcaatattttctgttgcacccccctttgcatatttaacagcacctat |
22954305 |
T |
|
| Q |
316 |
acttgaaaaattagtagcaaggttaggttgtatcaggaagcttgtatctggaacccaagttcgatgaagcgggtcaacactagaggaaacacttggacca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22954306 |
acttgaaaaattagtagcaaggttaggttgtatcaggaagcttgtatctggaacccaagttcgatgaagcgggtcaacactagaggaaacacttggacca |
22954405 |
T |
|
| Q |
416 |
cccatgttaagcctaaaaaccgtctcaaatgcatctgtcaacaaccctgtgtactctcttcgcggattcaaggcgatagcatcatcggcaattaggtcgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22954406 |
cccatgttaagcctaaaaaccgtctcaaatgcatctgtcaacaaccctgtgtactctcttcgcggattcaaggcgatagcatcatcggcaattaggtcgt |
22954505 |
T |
|
| Q |
516 |
caggcacagaaac |
528 |
Q |
| |
|
||||||||||||| |
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|
| T |
22954506 |
caggcacagaaac |
22954518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 41049640 - 41049753
Alignment:
| Q |
98 |
taaacattgaaataaagttcattaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatg |
197 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| || ||||| || ||| |||||||||||||||||||||||| || |||||||| ||| | |
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| T |
41049640 |
taaacattgaaataaagtgtattgagacctttactgactatatcacaaaagtgagttcgaacaaggtattgaaatcctggctccgtatcaaactgccacg |
41049739 |
T |
|
| Q |
198 |
tcacattgaaatta |
211 |
Q |
| |
|
|||||||||||||| |
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|
| T |
41049740 |
tcacattgaaatta |
41049753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 13974678 - 13974730
Alignment:
| Q |
98 |
taaacattgaaataaagttcattaagacctttactgacaatgtcacagaaatg |
150 |
Q |
| |
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||||||||||| ||||||| |||||| ||||| || ||||||||||| ||||| |
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|
| T |
13974678 |
taaacattgaagtaaagttgattaagtcctttgctcacaatgtcacaaaaatg |
13974730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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