View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_high_13 (Length: 411)
Name: NF19264_high_13
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 67 - 403
Target Start/End: Original strand, 11900522 - 11900859
Alignment:
| Q |
67 |
gttattgggaaaaaggtttgtttttaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgatatagtcatttaggaggagagagttcata |
166 |
Q |
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| T |
11900522 |
gttattgggaaaaaggtttgtatttaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgacatagtcatttgggaggagagagttcata |
11900621 |
T |
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| Q |
167 |
ctttgaaggatttgggagagcaattgattctctcataactcctctaactatattttgtttagtccattcaattca--tttattgttatttttcctttaaa |
264 |
Q |
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| T |
11900622 |
cttttaaggatttgggagagcaattgattctctcatacctcctctaactatattttgtttagtccattcaattcattttttttgttattttttctttaaa |
11900721 |
T |
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| Q |
265 |
tcatgagtttgtttttatgcaactgaatctaatgcatgtagtgtcctagggcaaatgaatcttatgcatgtccttaagattagagattggttctaccatg |
364 |
Q |
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| T |
11900722 |
tcatgagtttg-ttttatgcaactgaatctaatgcatgtagtgtcctagggcaaatgaatcttatgcatgtccttaagattagagattggttctaccatg |
11900820 |
T |
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| Q |
365 |
taatttaatgatttactcacttttttgtgaaattcatct |
403 |
Q |
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| T |
11900821 |
taatttaatgatttactcacttttttgtgaaattcatct |
11900859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 43 - 275
Target Start/End: Complemental strand, 55817450 - 55817216
Alignment:
| Q |
43 |
ttcatctttgttttttaatttagtgttattgggaaaaaggtttgtttttaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgatatag |
142 |
Q |
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| T |
55817450 |
ttcatctttgttttttaatttagtgttattggaaaaaaggtttgtatctaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgacacag |
55817351 |
T |
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| Q |
143 |
tcatttaggaggagagagttcatactttgaaggatttgggagagcaattgattctctcataactcctctaactatattttgtttagtccattcaattcat |
242 |
Q |
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| T |
55817350 |
tcatttgggaggagagagttcattcctttaaggatttgggagagcaattgattctctcatacctcctctaattattttttgtttagtccattcaattcat |
55817251 |
T |
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| Q |
243 |
tta--ttgttatttttcctttaaatcatgagtttg |
275 |
Q |
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| T |
55817250 |
ttattttgttatttttcctttaaatcatgagtttg |
55817216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 40165565 - 40165612
Alignment:
| Q |
11 |
tcatctccatgttatttactctttgttccttcttcatctttgtttttt |
58 |
Q |
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| T |
40165565 |
tcatctccatattgtttactctttgtttcttcttcatctttgtttttt |
40165612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 45455672 - 45455627
Alignment:
| Q |
11 |
tcatctccatgttatttactctttgttccttcttcatctttgtttt |
56 |
Q |
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| T |
45455672 |
tcatctccatattgtttattctttgtttcttcttcatctttgtttt |
45455627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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