View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_high_20 (Length: 310)
Name: NF19264_high_20
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 48107814 - 48108098
Alignment:
| Q |
1 |
acactgttttatttcaaggcattgacaacacaagaaagtttatgcaatataatgtttaagaattaataatcatattaaaagatgtgtcaatattattacc |
100 |
Q |
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| T |
48107814 |
acactgttttattccaaggcattgacaacacaagaaaatttatgcaat-----gtttaagaattaataatcatattaaaagatgtgtca------ttacc |
48107902 |
T |
|
| Q |
101 |
tcaatagtagcaaaataatcgtagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaattgtagcact |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48107903 |
tcaatagtagcaaaataatcatagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaatagtagcact |
48108002 |
T |
|
| Q |
201 |
gaattat--agagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttcat |
294 |
Q |
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| T |
48108003 |
gaattatagagagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttcat |
48108098 |
T |
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