View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19264_high_28 (Length: 243)

Name: NF19264_high_28
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19264_high_28
NF19264_high_28
[»] chr7 (1 HSPs)
chr7 (1-226)||(3417192-3417417)
[»] chr5 (2 HSPs)
chr5 (1-226)||(12540974-12541202)
chr5 (1-226)||(28385623-28385851)
[»] chr2 (3 HSPs)
chr2 (1-223)||(13440489-13440714)
chr2 (3-226)||(13448654-13448880)
chr2 (1-226)||(13455123-13455351)
[»] chr6 (2 HSPs)
chr6 (1-207)||(12589847-12590056)
chr6 (9-123)||(12483229-12483343)
[»] scaffold0536 (2 HSPs)
scaffold0536 (30-104)||(6295-6369)
scaffold0536 (162-207)||(6189-6234)
[»] chr4 (2 HSPs)
chr4 (161-220)||(48962746-48962805)
chr4 (1-62)||(48958436-48958497)
[»] chr8 (2 HSPs)
chr8 (161-207)||(12641159-12641205)
chr8 (6-84)||(12641285-12641363)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3417417 - 3417192
Alignment:
Q  1 catatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3417417 catatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctc 3417318  T
Q  101 actctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaatagaagatggaccaagatgccaagccttgtgacctgcggttttctca 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3417317 actctcagcaccctcgtttcccccacctgatttctctagagtggttctccaaatagaagatggaccaagatgccaagccttgtgacctacggttttctca 3417218  T
Q  201 tagtgttgaatacactcttctccatc 226  Q
    ||||||||||||||||||||||||||    
T  3417217 tagtgttgaatacactcttctccatc 3417192  T

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Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 12540974 - 12541202
Alignment:
Q  1 catatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctc 100  Q
    ||||||||||||| ||| ||||||  || | |||||||||||||||||||| ||||||||||||||| |||||||||||||| || ||| |||| |||||    
T  12540974 catatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctc 12541073  T
Q  101 actctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaat---agaagatggaccaagatgccaagccttgtgacctgcggttttc 197  Q
     ||| |||||||||| |||||||  |||||||||||| || || || ||  |||   ||||| ||||||||||||||||||||||||||| | |||||||    
T  12541074 gctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttc 12541173  T
Q  198 tcatagtgttgaatacactcttctccatc 226  Q
    || |||||||| | |||||||||||||||    
T  12541174 tcgtagtgttggacacactcttctccatc 12541202  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28385623 - 28385851
Alignment:
Q  1 catatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctc 100  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||||||  |||||||||||| | ||||| ||||||||  |||||||||| |||||    
T  28385623 catatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctc 28385722  T
Q  101 actctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaata---gaagatggaccaagatgccaagccttgtgacctgcggttttc 197  Q
     ||| || ||| || |||||||    ||||||||||| ||   ||| | | ||||   |||| ||||||||||||||||||||||||||| | |||||||    
T  28385723 gctcacatcactcttgtttcccttctctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttc 28385822  T
Q  198 tcatagtgttgaatacactcttctccatc 226  Q
    || |||||||  | |||||||||||||||    
T  28385823 tcgtagtgtttgacacactcttctccatc 28385851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13440489 - 13440714
Alignment:
Q  1 catatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctc 100  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||  | ||||| ||||||||||| ||| || |||      
T  13440489 catatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcat 13440588  T
Q  101 actctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaat---agaagatggaccaagatgccaagccttgtgacctgcggttttc 197  Q
      || || ||||||| |||||||   ||||||||||| || ||||| | | |||   ||||| |||||| ||||||||| |||||||||| | |||||||    
T  13440589 gttcacatcaccctcctttcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttc 13440688  T
Q  198 tcatagtgttgaatacactcttctcc 223  Q
    ||||||||||| || |||||||||||    
T  13440689 tcatagtgttggatgcactcttctcc 13440714  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 13448654 - 13448880
Alignment:
Q  3 tatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcac 102  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||   | ||| | |||||||||||||| ||| ||| ||     
T  13448654 tatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacat 13448753  T
Q  103 tctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctc 199  Q
    || |||||||||| |||||||   ||| ||||||| |||  ||| | | |||   ||||| |||||||||||||||| |||||||||| | || ||||||    
T  13448754 tcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctc 13448853  T
Q  200 atagtgttgaatacactcttctccatc 226  Q
     |||||||| || ||||||||||||||    
T  13448854 gtagtgttgtatgcactcttctccatc 13448880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13455123 - 13455351
Alignment:
Q  1 catatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctc 100  Q
    ||||||||||||||| |||  |||| || | ||||||||||||||||||||| ||||||||||||   | |||||  ||||| ||||||||||| ||  |    
T  13455123 catatagttgtttattagatgaataattgatgcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtac 13455222  T
Q  101 actctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaat---agaagatggaccaagatgccaagccttgtgacctgcggttttc 197  Q
    | || ||  | ||||||||||||   ||| ||| ||| ||  |||||| |||||   ||||| |||||||| ||||||| ||||||||||||  |||||     
T  13455223 attcacaaaaacctcgtttcccctctctgatttttcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttt 13455322  T
Q  198 tcatagtgttgaatacactcttctccatc 226  Q
    || |||||||| || ||||||||||||||    
T  13455323 tcgtagtgttggatgcactcttctccatc 13455351  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12590056 - 12589847
Alignment:
Q  1 catatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctc 100  Q
    |||| ||||||||||| |||||||||   | ||| ||||| |||||||||||||| |||||| || | |  ||||| ||||||||||| ||||| ||| |    
T  12590056 cataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgagtttagccaactcagacactcttgcac 12589957  T
Q  101 actctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaata---gaagatggaccaagatgccaagccttgtgacctgcggttttc 197  Q
      || || ||| ||| ||||||| | ||||||||||| ||   ||| |   ||||   |||| ||||||||||||||||||||||||||||| |||||||    
T  12589956 gttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtggttttc 12589857  T
Q  198 tcatagtgtt 207  Q
    ||||||||||    
T  12589856 tcatagtgtt 12589847  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 12483343 - 12483229
Alignment:
Q  9 tgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcag 108  Q
    |||||||||||||||| |   | ||| ||||| ||||||||||||||||| ||  |||| | |||||| ||||||||  | ||||||||| | ||| ||     
T  12483343 tgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaa 12483244  T
Q  109 caccctcgtttcccc 123  Q
    ||| |||||||||||    
T  12483243 cactctcgtttcccc 12483229  T

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Target: scaffold0536 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 6369 - 6295
Alignment:
Q  30 aagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactc 104  Q
    ||||||||||| ||||||||||||||||||||| || | |  ||||  ||||||||||| ||||||||| |||||    
T  6369 aagcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactc 6295  T

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Target: scaffold0536; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 6234 - 6189
Alignment:
Q  162 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgtt 207  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||||    
T  6234 ggaccaagatgccaagctttgtgacctgtagttttctcgtagtgtt 6189  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 48962746 - 48962805
Alignment:
Q  161 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttc 220  Q
    |||||| |||||||||||||||||||| | ||||||||| |||||||  || ||||||||    
T  48962746 tggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttc 48962805  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48958436 - 48958497
Alignment:
Q  1 catatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagtta 62  Q
    |||| |||||||||||||| |||||    | ||||||||| |||||||||||||||||||||    
T  48958436 cataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagtta 48958497  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 12641205 - 12641159
Alignment:
Q  161 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgtt 207  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||    
T  12641205 tggaccaagatgccaagccttgtaacccatggttttctcatagtgtt 12641159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 12641363 - 12641285
Alignment:
Q  6 agttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaac 84  Q
    ||||||||||||||||||||    | ||| |||||||||||||| |||||||| ||| |||| | ||| ||||||||||    
T  12641363 agttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagccaac 12641285  T

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