View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_high_29 (Length: 243)
Name: NF19264_high_29
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 8309148 - 8308928
Alignment:
| Q |
6 |
aatctctaccaaatgagaatattaatcaaatgaaaattttaaaatattaatattaaattatctactgtagttagttgtgatctctatcaaacatgatggt |
105 |
Q |
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| T |
8309148 |
aatctctaccaaatgagaatattaatcaaatgaaatttttaaaatgttaatattaaattatctactgtagttagttgtgatctctatcaaacatgatggt |
8309049 |
T |
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| Q |
106 |
cttattttgtttctatttgagtatgtaagtgacaaaatagaaatgaaattttgttattctcacaacagctggatatcatgttcagcaatgctggaatcat |
205 |
Q |
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| T |
8309048 |
cttattttgtttctatttgagtatgtaagtgacaaaatagaaatgaaattttgttattctcacaacagctggatatcatgttcagcaatgctggaatcat |
8308949 |
T |
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| Q |
206 |
tagttccacagctcaaacaat |
226 |
Q |
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| T |
8308948 |
tagttccacagctcaaacaat |
8308928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 8259528 - 8259471
Alignment:
| Q |
167 |
acaacagctggatatcatgttcagcaatgctggaatcattagttccacagctcaaaca |
224 |
Q |
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| T |
8259528 |
acaacaggtagatataatgttcagcaatgctggaatcgttagtcccacagatcaaaca |
8259471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 8289953 - 8289888
Alignment:
| Q |
144 |
agaaatgaaattttgttattctcacaacagctggatatcatgttcagcaatgctggaatcattagt |
209 |
Q |
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| T |
8289953 |
agaaatgaaattatgttattctcacaccaggtagatataatgttcaccaatgccggaatctttagt |
8289888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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