View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_high_35 (Length: 237)
Name: NF19264_high_35
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_high_35 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36305181 - 36304945
Alignment:
| Q |
1 |
aatgaattaccaaattgttgggaaatggtatgttgtgttgttacaacatttttagtattatgagtttgagtggtagcttcatcattggaactccaaatgc |
100 |
Q |
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| T |
36305181 |
aatgaattaccaaattgttgggaaatggtgtgttgtgttgttacaacatttttagtattatgagtatgagtggtagcttcatcattggaactccaaatgc |
36305082 |
T |
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| Q |
101 |
tggcaaggaattcatccatgttgagggaactaaagctctttccactcttgcattggaactcatctagggtaagtgagagtattgaggtttgcttgcttgg |
200 |
Q |
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| T |
36305081 |
tggcaaggaattcatccatgttgagggaactaaagctctttccactcttgcattggaactcatctagggtaagtgagagtattgaggtttgcttgcttgg |
36304982 |
T |
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| Q |
201 |
ttgagaaaatgtagcttcttgttcttgcaatggaacc |
237 |
Q |
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| T |
36304981 |
ttgagaaaatgtagcttcttgttcttgcaatggaacc |
36304945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 36320733 - 36320552
Alignment:
| Q |
2 |
atgaattaccaaattgttgggaaatggtatgttgtgttgttacaacatttttagtattat---gagtttgagtggtagcttcatcattggaactccaaat |
98 |
Q |
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| T |
36320733 |
atgaattaccaagctgttgggaaatggtgtgttctgctgttgcaacactttcagtattgttgtgagtttgagcagtatcttcatcattggaactccaaat |
36320634 |
T |
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| Q |
99 |
gctggcaaggaattcatccatgttgagggaactaaagctctttccactcttgcattggaactcatctagggtaagtgagagt |
180 |
Q |
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| T |
36320633 |
gctagctaggaactcatccatgttgagggagctaaagttcttatcattattgcattggaaatcatccagggtgagtgagagt |
36320552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 35566723 - 35566638
Alignment:
| Q |
149 |
tgcattggaactcatctagggtaagtgagagtattgaggtttgcttgcttggttgagaaaatgtag---cttcttgttcttgcaat |
231 |
Q |
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| T |
35566723 |
tgcattggaaatcatcaagggtgagtgagagtgttgagttttgattgctcggttgagaaaatgtagattcttcttgttcttgcaat |
35566638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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