View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19264_high_8 (Length: 486)

Name: NF19264_high_8
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19264_high_8
NF19264_high_8
[»] chr6 (17 HSPs)
chr6 (269-468)||(31565162-31565361)
chr6 (269-435)||(33414293-33414459)
chr6 (18-204)||(33414524-33414710)
chr6 (18-137)||(31564998-31565117)
chr6 (53-204)||(33269497-33269648)
chr6 (269-425)||(33383760-33383916)
chr6 (33-204)||(33383981-33384156)
chr6 (294-425)||(33351400-33351530)
chr6 (269-379)||(33292802-33292912)
chr6 (18-167)||(33258187-33258338)
chr6 (18-204)||(33395008-33395196)
chr6 (308-411)||(33258067-33258170)
chr6 (103-193)||(33292988-33293078)
chr6 (273-345)||(33269355-33269427)
chr6 (18-110)||(33278972-33279064)
chr6 (295-335)||(31567428-31567468)
chr6 (31-107)||(33280358-33280434)
[»] chr2 (3 HSPs)
chr2 (269-435)||(17445747-17445910)
chr2 (18-161)||(17447839-17447982)
chr2 (132-204)||(17445607-17445679)
[»] scaffold0428 (4 HSPs)
scaffold0428 (18-167)||(2308-2459)
scaffold0428 (308-411)||(2188-2291)
scaffold0428 (18-110)||(15189-15281)
scaffold0428 (31-107)||(13819-13895)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 269 - 468
Target Start/End: Original strand, 31565162 - 31565361
Alignment:
269 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31565162 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 31565261  T
369 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 468  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31565262 aagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 31565361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 269 - 435
Target Start/End: Complemental strand, 33414459 - 33414293
Alignment:
269 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 368  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
33414459 ttgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagacttggtgaggca 33414360  T
369 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 435  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||| |||||||||    
33414359 aagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactctcggagaaaca 33414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 33414710 - 33414524
Alignment:
18 aagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttt 117  Q
    |||||||| |||||||||||||||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||     
33414710 aagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttg 33414611  T
118 gttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||    
33414610 gttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaag 33414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 31564998 - 31565117
Alignment:
18 aagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttt 117  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
31564998 aagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttg 31565097  T
118 gttcatgatcttgcaatgca 137  Q
    ||||||||||||||||||||    
31565098 gttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 33269648 - 33269497
Alignment:
53 gtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtcc 152  Q
    ||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
33269648 gtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtcc 33269549  T
153 acaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 204  Q
    |||||||||||||||||||||||||||||||||  |||| | ||||||||||    
33269548 acaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaag 33269497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 269 - 425
Target Start/End: Complemental strand, 33383916 - 33383760
Alignment:
269 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 368  Q
    ||||||||||||||||||||||||| |||  ||| || |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
33383916 ttgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaagacttggtgaggca 33383817  T
369 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactct 425  Q
    |||||||||||||||||||||||||||||  |   ||||||||||||||||||||||    
33383816 aagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttcactct 33383760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 33384156 - 33383981
Alignment:
33 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 132  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
133 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 204  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||    
33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaag 33383981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 294 - 425
Target Start/End: Complemental strand, 33351530 - 33351400
Alignment:
294 attaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaac 393  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||| ||||||    
33351530 attaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaac 33351432  T
394 attactgtgcggcgttttgttcggttcactct 425  Q
    ||||  | ||||||||||||||||||||||||    
33351431 attaaagcgcggcgttttgttcggttcactct 33351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 269 - 379
Target Start/End: Complemental strand, 33292912 - 33292802
Alignment:
269 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 368  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||   | |||||||||| ||||||    
33292912 ttgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaagacttggagaggca 33292813  T
369 aagtatagctg 379  Q
    |||||||||||    
33292812 aagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 33258338 - 33258187
Alignment:
18 aagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtt 116  Q
    |||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| ||||||||    
33258338 aagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagtt 33258239  T
117 tgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 167  Q
     ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
33258238 ggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 33395196 - 33395008
Alignment:
18 aagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggta--gaagtgagaaattcaaggagt 115  Q
    |||||||| || ||||||| ||||| ||| |||   |||||| ||||||||||| |||||||| |||||| | || |  ||||||| | |||||||||||    
33395196 aagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagt 33395097  T
116 ttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 204  Q
    | |||  ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |||||||    
33395096 tggttgctgatctttcaatgcaataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaag 33395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 411
Target Start/End: Complemental strand, 33258170 - 33258067
Alignment:
308 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 407  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 33258071  T
408 tttt 411  Q
    ||||    
33258070 tttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 33293078 - 33292988
Alignment:
103 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 193  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  |||||||    
33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaacca 33292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 33269427 - 33269355
Alignment:
273 tgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgtt 345  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
33269427 tgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 33279064 - 33278972
Alignment:
18 aagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 110  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
33279064 aagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 31567428 - 31567468
Alignment:
295 ttaggagagcttgctcttctagagcagcctttcattaagga 335  Q
    |||||||||||| ||||||||||||||||||||||||||||    
31567428 ttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 33280434 - 33280358
Alignment:
31 tacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 107  Q
    |||||||||||||||| |||| || ||||| ||||||| || ||||| || |||||| | || ||||||||||||||    
33280434 tacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 269 - 435
Target Start/End: Original strand, 17445747 - 17445910
Alignment:
269 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 368  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||    
17445747 ttgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggca 17445846  T
369 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 435  Q
    |||||||||||| ||||| |||    |||  ||||||||||||||| |||||||||  |||||||||    
17445847 aagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttcactcccggagaaaca 17445910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 17447839 - 17447982
Alignment:
18 aagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttt 117  Q
    |||||||| |||||||||||||||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| ||||||||||||     
17447839 aagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttg 17447938  T
118 gttcatgatcttgcaatgcaagttgctgcttgtccacaggttca 161  Q
    ||| ||||||||||||||||||| ||||||| ||||||||||||    
17447939 gttgatgatcttgcaatgcaagtggctgcttttccacaggttca 17447982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 17445607 - 17445679
Alignment:
132 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 204  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaag 17445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 2459 - 2308
Alignment:
18 aagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtt 116  Q
    |||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| ||||||||    
2459 aagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagtt 2360  T
117 tgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 167  Q
     ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
2359 ggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 411
Target Start/End: Complemental strand, 2291 - 2188
Alignment:
308 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 407  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 2192  T
408 tttt 411  Q
    ||||    
2191 tttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 15189 - 15281
Alignment:
18 aagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 110  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
15189 aagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

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Target: scaffold0428; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 13819 - 13895
Alignment:
31 tacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 107  Q
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13819 tacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 13895  T

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