View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_1 (Length: 781)
Name: NF19264_low_1
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 1 - 766
Target Start/End: Complemental strand, 39981526 - 39980761
Alignment:
| Q |
1 |
tgatcgtgctgcaatctttgatattgcagaaaattactgtcaaatatgactgatgcaactttaatagttgtgatggtagagacatcaaaaacattggtta |
100 |
Q |
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| T |
39981526 |
tgatcgtgctgcaatctttgatattgcagaaaattactgtcaaatatgactgatgcaactttaatagttgtgatggtagagacatcaaaaacattggtta |
39981427 |
T |
|
| Q |
101 |
tactatccaagttcttagcttatcatttatcatttgaagcaatatggtaaaacaagcatacctatgcatttagcaaagagagtgcgaggaagataaccgt |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981426 |
tactatccaagttcttaacttatcatttatcatttgaagcaatatggtaaaacaagcatacctatgcatttagcaaagagagtgcgaggaagataaccgt |
39981327 |
T |
|
| Q |
201 |
cagttgtcacggtaagcttatcaaacactttctcaacttcagaccatcctgcaccaacatcagtcttgctgataaacttgagtccagtgagagcatgagc |
300 |
Q |
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| T |
39981326 |
cagttgtcacggtaagcttatcaaacactttctcaacttcagaccatcctgcaccaacatcagtcttgctgataaacttgagtccagtgagagcatgagc |
39981227 |
T |
|
| Q |
301 |
caccgcagacttggtcctttccaatcgctttgctggttctggttttgaaaacgatgccaaacgcttcagctgctttatacgaatagtagcattttgaacc |
400 |
Q |
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| T |
39981226 |
caccgcagacttggtcctttccaatcgctttgctggttctggttttgaaaacgatgccaaacgcttcagctgctttatacgaatagtagcattttgaacc |
39981127 |
T |
|
| Q |
401 |
actgaagcaccaaaggatttcttcttctccaacttattcccagtcaaagactgtttctcatgttccccttctcccatgtcactttctgttacagttttca |
500 |
Q |
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| T |
39981126 |
actgaagcaccaaaggatttcttcttctccaacttattcccagtcaaagactgtttctcatgttccccttctcccatgtcactttctgttacagttttca |
39981027 |
T |
|
| Q |
501 |
cactgtgtaaggcaacagagtcaccttgaatgtccatggtcacctcaacatagtctgcatcttcttctatgttatggtcaatatctgtgacagatttgga |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39981026 |
cactgtgtaaggcaacagagtcaccttgaatgtccatggtcacctcaacatagtctgcatcttcttctatgttatggtcaacatctgtgacagatttgga |
39980927 |
T |
|
| Q |
601 |
ctcagtagtgcttaactttgtgctgttctcaggagcaatgagttctatatctgattcatgatgatgaagatctgcagaagatcctcccatgttgctgttt |
700 |
Q |
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| T |
39980926 |
ctcagtagtgcttaactttgtgctgttctcaggagcaatgagttctatatctgattcatgatgatgaagatctgcagaagatcctcccatgttgctgttt |
39980827 |
T |
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| Q |
701 |
tgtttttctgaagcactgattcaacactttctgatctcttttgtcagactcatttgctcctttctg |
766 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39980826 |
tgtttttctgaagcactgattcaacactttctgatctcttttgtcagactcatttgctcctttctg |
39980761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 537
Target Start/End: Complemental strand, 44912847 - 44912801
Alignment:
| Q |
491 |
acagttttcacactgtgtaaggcaacagagtcaccttgaatgtccat |
537 |
Q |
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| T |
44912847 |
acagttttaacactgtgtaaagcaacagagtcaccttgaatatccat |
44912801 |
T |
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