View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19264_low_10 (Length: 486)

Name: NF19264_low_10
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19264_low_10
NF19264_low_10
[»] chr3 (16 HSPs)
chr3 (173-398)||(18946276-18946501)
chr3 (190-398)||(45031595-45031802)
chr3 (256-389)||(47867733-47867866)
chr3 (255-387)||(37222550-37222682)
chr3 (302-398)||(48161724-48161820)
chr3 (302-395)||(55146798-55146891)
chr3 (302-394)||(30716110-30716202)
chr3 (293-387)||(4950652-4950745)
chr3 (74-152)||(52560280-52560358)
chr3 (75-154)||(48165257-48165337)
chr3 (323-387)||(53562252-53562315)
chr3 (75-154)||(13933-14012)
chr3 (75-138)||(45031512-45031575)
chr3 (269-332)||(52560502-52560564)
chr3 (339-372)||(18894101-18894134)
chr3 (76-153)||(18942600-18942677)
[»] chr2 (12 HSPs)
chr2 (173-398)||(19507921-19508146)
chr2 (255-387)||(26170591-26170723)
chr2 (315-398)||(40614476-40614559)
chr2 (293-387)||(34457177-34457270)
chr2 (302-387)||(29899377-29899462)
chr2 (76-160)||(28654696-28654780)
chr2 (321-387)||(2121036-2121101)
chr2 (76-169)||(13329744-13329837)
chr2 (74-139)||(44070745-44070810)
chr2 (73-161)||(31500777-31500865)
chr2 (340-377)||(21831310-21831347)
chr2 (76-160)||(2119445-2119529)
[»] chr7 (20 HSPs)
chr7 (173-314)||(42013721-42013862)
chr7 (173-325)||(34195216-34195367)
chr7 (304-398)||(46529237-46529331)
chr7 (259-398)||(13953205-13953344)
chr7 (320-398)||(3938711-3938789)
chr7 (269-387)||(1804818-1804935)
chr7 (271-377)||(17733830-17733936)
chr7 (271-387)||(31592553-31592668)
chr7 (75-158)||(42014574-42014657)
chr7 (80-154)||(41957697-41957771)
chr7 (341-387)||(41957980-41958026)
chr7 (119-180)||(34192024-34192085)
chr7 (293-369)||(11409457-11409533)
chr7 (324-398)||(28510509-28510583)
chr7 (76-154)||(45075208-45075286)
chr7 (321-370)||(2393261-2393310)
chr7 (74-135)||(42013596-42013657)
chr7 (344-387)||(45414538-45414580)
chr7 (116-169)||(40792995-40793048)
chr7 (75-131)||(39881340-39881396)
[»] chr4 (10 HSPs)
chr4 (255-387)||(12028099-12028231)
chr4 (302-398)||(39390634-39390730)
chr4 (395-486)||(5182446-5182537)
chr4 (395-486)||(4856794-4856885)
chr4 (305-398)||(55741190-55741283)
chr4 (302-387)||(31302498-31302582)
chr4 (271-387)||(54603949-54604064)
chr4 (395-486)||(5160201-5160292)
chr4 (413-483)||(7142383-7142456)
chr4 (413-486)||(5173117-5173190)
[»] chr5 (8 HSPs)
chr5 (255-387)||(7250234-7250366)
chr5 (302-394)||(19870703-19870795)
chr5 (332-398)||(9042147-9042213)
chr5 (302-387)||(10826811-10826896)
chr5 (303-387)||(42449763-42449847)
chr5 (323-387)||(23062451-23062514)
chr5 (302-341)||(9042232-9042271)
chr5 (92-154)||(34393995-34394057)
[»] chr8 (8 HSPs)
chr8 (256-387)||(1550772-1550902)
chr8 (302-386)||(44119158-44119242)
chr8 (329-387)||(23877952-23878010)
chr8 (269-377)||(20495294-20495402)
chr8 (74-158)||(40494077-40494161)
chr8 (321-373)||(23718470-23718522)
chr8 (339-387)||(42100502-42100549)
chr8 (75-154)||(41270304-41270383)
[»] chr6 (4 HSPs)
chr6 (302-398)||(5614045-5614141)
chr6 (305-398)||(1259813-1259906)
chr6 (305-373)||(19273473-19273541)
chr6 (75-154)||(5620757-5620836)
[»] chr1 (10 HSPs)
chr1 (302-387)||(31385559-31385644)
chr1 (303-387)||(42465089-42465173)
chr1 (293-387)||(46200928-46201021)
chr1 (325-387)||(13706360-13706421)
chr1 (70-160)||(4911548-4911638)
chr1 (271-373)||(18239663-18239765)
chr1 (302-387)||(15292541-15292625)
chr1 (302-356)||(27108852-27108906)
chr1 (75-161)||(31387947-31388033)
chr1 (302-370)||(42058403-42058471)
[»] scaffold0251 (1 HSPs)
scaffold0251 (271-387)||(1807-1922)
[»] scaffold0013 (1 HSPs)
scaffold0013 (305-387)||(86664-86751)
[»] scaffold1813 (1 HSPs)
scaffold1813 (293-387)||(609-702)
[»] scaffold0184 (1 HSPs)
scaffold0184 (293-387)||(28399-28492)
[»] scaffold0078 (1 HSPs)
scaffold0078 (293-387)||(44352-44445)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 173 - 398
Target Start/End: Complemental strand, 18946501 - 18946276
Alignment:
Q  173 tagttaactactgttgtattatgtatcttaacaaaacgcagaaaccttcagtttctcattacatacatgcaaacttcattcaaaaatataaccaacaatc 272  Q
    |||||| | ||||||| ||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18946501 tagttaccgactgttgcattctgtatcttaacatatcgcagaaacctccagtttctcattacatacatgcaaacttcattcaaaaatataaccaacaatc 18946402  T
Q  273 acccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttaggg 372  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18946401 acccaaacttcaatttgctcgaaaatcattcaaatttcatcaattaattcacaagtaagttatttccttcctatttacatgcaatgtagtttgtttaggg 18946302  T
Q  373 tgttagttttcataaatttgagcaaa 398  Q
    ||||||||||||||||||||||||||    
T  18946301 tgttagttttcataaatttgagcaaa 18946276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 190 - 398
Target Start/End: Original strand, 45031595 - 45031802
Alignment:
Q  190 attatgtatcttaacaaaacgcagaaaccttcagtttctcattacatacatgcaaacttcattcaaaaatataaccaacaatcacccaaacttcaatttg 289  Q
    |||||||||||||||| ||| || |||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  45031595 attatgtatcttaacagaac-caaaaacctccagattctcattacatacatgcaaactccattcaaaagtataaccaataatcacccaaacttcaatttg 45031693  T
Q  290 cttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaat 389  Q
    || ||||||||| |||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  45031694 ctcgaaaatcattcaaatttcatcaattaattcacaagtaagttatttccttcctgtttacatgcaatgtagtttgtttaggatgttagttttcataaat 45031793  T
Q  390 ttgagcaaa 398  Q
    |||||||||    
T  45031794 ttgagcaaa 45031802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 256 - 389
Target Start/End: Original strand, 47867733 - 47867866
Alignment:
Q  256 aaatataaccaacaatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgca 355  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||  |||||| | || |||| ||||||||||||    
T  47867733 aaatataaccaaaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcactggtaagtacctttcttcttatttacatgca 47867832  T
Q  356 atgtagtttgtttagggtgttagttttcataaat 389  Q
    |||||| ||| |||||||||||||||||||||||    
T  47867833 atgtaggttgcttagggtgttagttttcataaat 47867866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 255 - 387
Target Start/End: Complemental strand, 37222682 - 37222550
Alignment:
Q  255 aaaatataaccaacaatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgc 354  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||| | || |||| |||||||||||    
T  37222682 aaaatataaccaaaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaatttacaagaaagtacctttcttcttatttacatgc 37222583  T
Q  355 aatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||| ||  |||||||||||||||||||||    
T  37222582 aatgtaggtttcttagggtgttagttttcataa 37222550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 48161724 - 48161820
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48161724 ccaaatttcatcaattaattcataagtaagttcttttcttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 48161820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 55146798 - 55146891
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagc 395  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  55146798 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttctttagggtgttagttttcataattttgagc 55146891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 30716110 - 30716202
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgag 394  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  30716110 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcagtgtagtttgtttagggtgttagttttcataattttgag 30716202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 4950745 - 4950652
Alignment:
Q  293 gaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||| || | |||| ||  ||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  4950745 gaaaatcatccaatttgcttcaagtaaatcacaagtaagttattttctttctatttacatgcaaggtagtttgtttagggtgtta-ttttcataa 4950652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 52560280 - 52560358
Alignment:
Q  74 tagaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaaca 152  Q
    |||||||||| |||| ||||||||||||||| ||||| ||| |||||||||| ||||||||||||| || |||||||||    
T  52560280 tagaaaattgcttttttgacaatgaaaccttcctattgacacaagtaaaatacgtaaatgcctccagcggcagttaaca 52560358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 48165337 - 48165257
Alignment:
Q  75 agaaaattgtttttgt-gacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaac 154  Q
    |||||||||||||| | |||||||||| ||| ||||| ||| |||||||||| |||||||||||||||| |||||||||||    
T  48165337 agaaaattgttttttttgacaatgaaatcttcctattgacataagtaaaatacgtaaatgcctccaacggcagttaacaac 48165257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 53562315 - 53562252
Alignment:
Q  323 acaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    |||||||||| | || ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  53562315 acaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtt-gttttcataa 53562252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 14012 - 13933
Alignment:
Q  75 agaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaac 154  Q
    ||||||||| |||| | |||||||||| || ||||| ||| ||||||||||||| |||||||||| || |||||||||||    
T  14012 agaaaattgcttttttaacaatgaaactttcctattgacacaagtaaaatatgttaatgcctccagcggcagttaacaac 13933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 45031512 - 45031575
Alignment:
Q  75 agaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctcc 138  Q
    ||||||||| |||| ||||||||||| ||| ||||| ||| || ||||||| ||||||||||||    
T  45031512 agaaaattgcttttttgacaatgaaatcttcctattgacacaaataaaatacgtaaatgcctcc 45031575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 52560502 - 52560564
Alignment:
Q  269 aatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagt 332  Q
    |||||||||||| ||| |||||| ||||||||||| ||||||||||| ||  ||||||||||||    
T  52560502 aatcacccaaacctca-tttgctcgaaaatcatcctaatttcatcaagtaaatcacaagtaagt 52560564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 18894101 - 18894134
Alignment:
Q  339 cttcctatttacatgcaatgtagtttgtttaggg 372  Q
    ||||||||||||||||||||||| ||||||||||    
T  18894101 cttcctatttacatgcaatgtaggttgtttaggg 18894134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 18942600 - 18942677
Alignment:
Q  76 gaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaa 153  Q
    ||||||||||||| |||||||||||  || ||||| ||| |||||||||| | ||||||| | |||| | ||||||||    
T  18942600 gaaaattgtttttctgacaatgaaaatttcctattgacacaagtaaaatacgcaaatgcccctaacggccgttaacaa 18942677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 173 - 398
Target Start/End: Original strand, 19507921 - 19508146
Alignment:
Q  173 tagttaactactgttgtattatgtatcttaacaaaacgcagaaaccttcagtttctcattacatacatgcaaac-ttcattcaaaaatataaccaacaat 271  Q
    ||||||||||| |||| |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |||    
T  19507921 tagttaactaccgttgcattatgtatcttaatagaacgcagaaacctccagtttctcattacatacatgcaaaccttcattcaaaa-tataaccaaaaat 19508019  T
Q  272 cacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagg 371  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19508020 cacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtactttgtttagg 19508119  T
Q  372 gtgttagttttcataaatttgagcaaa 398  Q
    ||||||||||| |||| ||||||||||    
T  19508120 gtgttagtttttataattttgagcaaa 19508146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 255 - 387
Target Start/End: Original strand, 26170591 - 26170723
Alignment:
Q  255 aaaatataaccaacaatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgc 354  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||| |||||||||||    
T  26170591 aaaatataaccaaatatcacctaaacttcaatttgctcgaaaatcatccaaatttcatcaattaactcacaagtaagttcttttcttcttatttacatgc 26170690  T
Q  355 aatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||| |||||||||||||||||| ||||||    
T  26170691 aatgtaggttgtttagggtgttagttctcataa 26170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 315 - 398
Target Start/End: Complemental strand, 40614559 - 40614476
Alignment:
Q  315 attatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40614559 attaattcacaagtaagttctttccttcctatatacatgcaatgtagtttgtttagggtgttagttttcataattttgagcaaa 40614476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 34457177 - 34457270
Alignment:
Q  293 gaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||| || | |||| ||  ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  34457177 gaaaatcatccaatttgcttcaagtaaatcacaagtaagttattttctttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataa 34457270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 29899377 - 29899462
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||| |||| || || ||||||| ||| ||| ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  29899377 ccaaatttcttcaagtaattaacaagtatgttattttcttcctatttcaatgcaatgtaggttgtttagggtgttagttttcataa 29899462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 28654780 - 28654696
Alignment:
Q  76 gaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgttgg 160  Q
    ||||||||||||| | ||||||||||||||||||| ||| ||||||||||   ||||||| ||| || ||||||||||| |||||    
T  28654780 gaaaattgtttttctaacaatgaaacctttctattgacacaagtaaaatactgaaatgcccccagcggcagttaacaaccgttgg 28654696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 2121101 - 2121036
Alignment:
Q  321 tcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||   || ||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  2121101 tcacaagtaagtatatttcttcctatttacatgcaatgtaggttgttcagggtgtta-ttttcataa 2121036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 13329744 - 13329837
Alignment:
Q  76 gaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgttggaagaaccgc 169  Q
    ||||||||||||| ||||||||||  ||| ||||| ||| |||||||  |||| |||||||| | ||| ||||||| || |||| |||||||||    
T  13329744 gaaaattgtttttttgacaatgaatacttcctattaacacaagtaaatgatgttaatgcctctagcgatagttaactaccgttgaaagaaccgc 13329837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 44070745 - 44070810
Alignment:
Q  74 tagaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctcca 139  Q
    |||| ||||| |||| |||||||||||| || ||||| ||| |||||||||| |||||||||||||    
T  44070745 tagagaattgcttttttgacaatgaaacattcctattgacacaagtaaaatacgtaaatgcctcca 44070810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 31500777 - 31500865
Alignment:
Q  73 atagaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgttgga 161  Q
    ||||||||||| |||| ||||||||||| |||  |||| ||| ||||||||||   |||||||| || || ||||||||||| ||||||    
T  31500777 atagaaaattgcttttctgacaatgaaaacttcatattgacacaagtaaaatactaaaatgccttcagcggcagttaacaaccgttgga 31500865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 21831310 - 21831347
Alignment:
Q  340 ttcctatttacatgcaatgtagtttgtttagggtgtta 377  Q
    ||||||||||||||||||| || |||||||||||||||    
T  21831310 ttcctatttacatgcaatgaaggttgtttagggtgtta 21831347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 2119445 - 2119529
Alignment:
Q  76 gaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgttgg 160  Q
    |||||||| |||| ||||||||||| |||  |||| ||| |||||||||||  ||||||  ||| || ||||||||||| |||||    
T  2119445 gaaaattgattttctgacaatgaaaacttcatattgacacaagtaaaatattgaaatgctcccagcggcagttaacaaccgttgg 2119529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 42013721 - 42013862
Alignment:
Q  173 tagttaactactgttgtattatgtatcttaacaaaacgcagaaaccttcagtttctcattacatacatgcaaacttcattcaaaaatataaccaacaatc 272  Q
    ||||||||||| |||| ||| |||||||||||| ||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||||    
T  42013721 tagttaactaccgttgcattctgtatcttaacataacgcagaaacctccaaattctcattacatacatgcaaacttcattaaaaaatataaccaacaatc 42013820  T
Q  273 acccaaacttcaatttgcttgaaaatcatccaaatttcatca 314  Q
    | ||||||||||||||| | ||||||||||||||||||||||    
T  42013821 atccaaacttcaatttgttcgaaaatcatccaaatttcatca 42013862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 173 - 325
Target Start/End: Original strand, 34195216 - 34195367
Alignment:
Q  173 tagttaactactgttgtattatgtatcttaacaaaacgcagaaaccttcagtttctcattacatacatgcaaacttcattcaaaaatataaccaacaatc 272  Q
    ||||||||||| |||| ||| |||||||||||| |||| ||||||||  |||||||||||||||||||| ||| ||||||||||| |||||| |||||||    
T  34195216 tagttaactaccgttgcattctgtatcttaacagaacgtagaaacctctagtttctcattacatacatgtaaatttcattcaaaa-tataacaaacaatc 34195314  T
Q  273 acccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcaca 325  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||| ||||||    
T  34195315 acccaaatttcaatttgctcggaaatcatccaaatttcatcaattaattcaca 34195367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 46529331 - 46529237
Alignment:
Q  304 aaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46529331 aaatttcatcaattaattcacaagtaagttatttccttcctatttaaatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 46529237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 398
Target Start/End: Complemental strand, 13953344 - 13953205
Alignment:
Q  259 tataaccaacaatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatg 358  Q
    |||||| || ||||||||||||||||||||||| ||||||||  |||||||||||||||| |||||||||||||| | | |||| |||||||| ||||||    
T  13953344 tataacaaaaaatcacccaaacttcaatttgctcgaaaatcaatcaaatttcatcaattaattcacaagtaagttatattcttcatatttacaagcaatg 13953245  T
Q  359 tagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    ||||||||||| ||| ||| ||| ||||  ||||||||||    
T  13953244 tagtttgtttaaggttttattttacatatttttgagcaaa 13953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 3938711 - 3938789
Alignment:
Q  320 ttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3938711 ttcacaagtaagttcttttcttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagcaaa 3938789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 387
Target Start/End: Complemental strand, 1804935 - 1804818
Alignment:
Q  269 aatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgttt 368  Q
    |||||||||||| ||| |||||| ||||||||||| |||||| |||| ||  ||||||||||||  | |   ||||||||||||||||||||||||||||    
T  1804935 aatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgttt 1804837  T
Q  369 agggtgttagttttcataa 387  Q
    |||||| ||||||||||||    
T  1804836 agggtgctagttttcataa 1804818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 271 - 377
Target Start/End: Complemental strand, 17733936 - 17733830
Alignment:
Q  271 tcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 370  Q
    ||||||||||||  ||||||  ||||||||||||| || | |||| ||  |||||||||||| | || ||||||||||||||||||||||| ||||||||    
T  17733936 tcacccaaactttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttag 17733837  T
Q  371 ggtgtta 377  Q
    |||||||    
T  17733836 ggtgtta 17733830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 31592553 - 31592668
Alignment:
Q  271 tcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 370  Q
    |||||||||| |  ||||||  ||||||||||||| || | |||| ||  |||||||||||| | || ||||||||||||||||||||||| ||||||||    
T  31592553 tcacccaaaccttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttag 31592652  T
Q  371 ggtgttagttttcataa 387  Q
    ||||||| |||||||||    
T  31592653 ggtgtta-ttttcataa 31592668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 42014657 - 42014574
Alignment:
Q  75 agaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgtt 158  Q
    ||||||||| |||| |||||||||||  |||||||| ||| |||||||||| ||||||||| |||  | |||||||||||||||    
T  42014657 agaaaattgcttttctgacaatgaaaaatttctattgacacaagtaaaatacgtaaatgcccccagtggcagttaacaactgtt 42014574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 41957697 - 41957771
Alignment:
Q  80 attgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaac 154  Q
    |||| |||| ||||||||||||||| ||||| ||| | |||||||| ||||||||| |||||| |||||||||||    
T  41957697 attgcttttttgacaatgaaaccttcctattgacacacgtaaaatacgtaaatgcccccaacggcagttaacaac 41957771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 41957980 - 41958026
Alignment:
Q  341 tcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  41957980 tcctatttagatgcaatgtagtttgtttagggtgctagttttcataa 41958026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 34192024 - 34192085
Alignment:
Q  119 taaaatatgtaaatgcctccaacgacagttaacaactgttggaagaaccgctgatagttaac 180  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||| ||| | ||||||||    
T  34192024 taaaatacgtaaatgcctccaacggcagttaacaaccgttggaagaatcgcaggtagttaac 34192085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 11409533 - 11409457
Alignment:
Q  293 gaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgttta 369  Q
    ||||||||||| || ||| |||| ||  ||||||||||||||||| ||| | ||||||||||||||||| |||||||    
T  11409533 gaaaatcatcctaacttcttcaagtaaatcacaagtaagttcttttctttcgatttacatgcaatgtaggttgttta 11409457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 28510583 - 28510509
Alignment:
Q  324 caagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    |||||||||  ||| ||||||||||||||||||||||| ||||||||||  ||| ||| | ||| ||||||||||    
T  28510583 caagtaagtcattttcttcctatttacatgcaatgtaggttgtttagggctttattttacttaattttgagcaaa 28510509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 45075208 - 45075286
Alignment:
Q  76 gaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaac 154  Q
    ||||||||||||| ||||||||||| ||| ||||| ||| ||||||||||   ||||||| ||| || |||||||||||    
T  45075208 gaaaattgtttttctgacaatgaaaacttcctattgacacaagtaaaatactaaaatgcccccagcggcagttaacaac 45075286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 2393310 - 2393261
Alignment:
Q  321 tcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 370  Q
    ||||||||||||  ||| ||||||||||||||||||||||| ||||||||    
T  2393310 tcacaagtaagtcattttcttcctatttacatgcaatgtagcttgtttag 2393261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 42013596 - 42013657
Alignment:
Q  74 tagaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcc 135  Q
    |||||||||| |||| ||||||||||| ||| ||||| ||| |||||||||| |||||||||    
T  42013596 tagaaaattgcttttttgacaatgaaatcttcctattgacacaagtaaaatacgtaaatgcc 42013657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 45414538 - 45414580
Alignment:
Q  344 tatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  45414538 tatttacacgcaatgtagtttgtttagggtgtta-ttttcataa 45414580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 40792995 - 40793048
Alignment:
Q  116 aagtaaaatatgtaaatgcctccaacgacagttaacaactgttggaagaaccgc 169  Q
    |||||||||| ||||||||| ||| || |||||||||||  |||||||||||||    
T  40792995 aagtaaaatacgtaaatgcccccagcggcagttaacaaccattggaagaaccgc 40793048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 39881340 - 39881396
Alignment:
Q  75 agaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaa 131  Q
    |||||||||||||| ||||||||||| ||| ||||| ||| | |||||||| |||||    
T  39881340 agaaaattgtttttctgacaatgaaaacttcctattaacacatgtaaaatacgtaaa 39881396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 255 - 387
Target Start/End: Complemental strand, 12028231 - 12028099
Alignment:
Q  255 aaaatataaccaacaatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgc 354  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | || |||| |||||||||||    
T  12028231 aaaatataaccaaaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcacaagtaagtacctttcttcttatttacatgc 12028132  T
Q  355 aatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||| ||| |||||||||||||||||||||    
T  12028131 aatgtaggttgcttagggtgttagttttcataa 12028099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 39390730 - 39390634
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39390730 ccaaatttcatcaattaattcacaagtaagttccttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagcaaa 39390634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 395 - 486
Target Start/End: Complemental strand, 5182537 - 5182446
Alignment:
Q  395 caaatatttcatgttatgattatctatcaaccaacttgggaatgaaccaactaaaatgtttctggagaggtccaagaatatcaaattatatt 486  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5182537 caaataattcatgttatgattatctatcaaccaacttgggaatgaaccaactaaattgtttctggagaggtccaagaatatcaaattatatt 5182446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 4856794 - 4856885
Alignment:
Q  395 caaatatttcatgttatgattatctatcaaccaacttgggaatgaaccaactaaaatgtttctggagaggtccaagaatatcaaattatatt 486  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  4856794 caaataattcatgttatgattatctatcaacgaacttgggaatgaaccaactaaattgtttctggagaggtccaagaataccaaattatatt 4856885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 55741283 - 55741190
Alignment:
Q  305 aatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    |||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55741283 aatttcttcaattaattcacaagaaagttcttttcttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagcaaa 55741190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 31302498 - 31302582
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||| |||| || || ||||||||||| |||  || ||||||||||||||||||||||||||||||||||| |||||||||    
T  31302498 ccaaatttcttcaagtaattaacaagtaagttattttatttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataa 31302582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 387
Target Start/End: Complemental strand, 54604064 - 54603949
Alignment:
Q  271 tcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 370  Q
    |||||||||| |  ||||||  ||||||||||||| || | |||| ||  |||||||||||| | || ||||||||||||| ||||||||| ||||||||    
T  54604064 tcacccaaacattcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacaagcaatgtaggttgtttag 54603965  T
Q  371 ggtgttagttttcataa 387  Q
    ||||||| |||||||||    
T  54603964 ggtgtta-ttttcataa 54603949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 486
Target Start/End: Complemental strand, 5160292 - 5160201
Alignment:
Q  395 caaatatttcatgttatgattatctatcaaccaacttgggaatgaaccaactaaaatgtttctggagaggtccaagaatatcaaattatatt 486  Q
    |||||| || ||||||||||||| |||||||||||||||| |||| |||||||   |||||| ||| |||||||  || |||||||| ||||    
T  5160292 caaataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtatt 5160201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 483
Target Start/End: Complemental strand, 7142456 - 7142383
Alignment:
Q  413 attatctatcaaccaa---cttgggaatgaaccaactaaaatgtttctggagaggtccaagaatatcaaattat 483  Q
    ||||| ||||||||||   ||||||| ||| ||||||| | |||||||||||||||||||||||  ||||||||    
T  7142456 attatgtatcaaccaatttcttgggagtgagccaactatattgtttctggagaggtccaagaatgccaaattat 7142383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 486
Target Start/End: Complemental strand, 5173190 - 5173117
Alignment:
Q  413 attatctatcaaccaacttgggaatgaaccaactaaaatgtttctggagaggtccaagaatatcaaattatatt 486  Q
    ||||| ||||||||||||||||| ||| ||||| | | |||| || ||||||||||  | ||||||||||||||    
T  5173190 attatttatcaaccaacttgggagtgagccaacaatattgttgctagagaggtccatcagtatcaaattatatt 5173117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 387
Target Start/End: Original strand, 7250234 - 7250366
Alignment:
Q  255 aaaatataaccaacaatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagt-tctttccttcctatttacatg 353  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||    
T  7250234 aaaatataaccaaaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcacaagtaagtatcttt-cttcttatttacatg 7250332  T
Q  354 caatgtagtttgtttagggtgttagttttcataa 387  Q
    |||||||| ||| |||||||||||||||||||||    
T  7250333 caatgtaggttgcttagggtgttagttttcataa 7250366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 19870703 - 19870795
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgag 394  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19870703 ccaaatttcatcaattaattcacaagtaagttatttccttcctatttacatgcaatgtagtttgtttagagtgttagttttcataattttgag 19870795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 9042213 - 9042147
Alignment:
Q  332 ttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9042213 ttctttcctttctatttacatgtaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 9042147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 10826896 - 10826811
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||| |||| || || ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10826896 ccaaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcataa 10826811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 42449847 - 42449763
Alignment:
Q  303 caaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    |||||||| |||| || || ||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  42449847 caaatttcttcaagtaattaacaagtaagttattttctttctatttgcatgcaatgtaggttgtttagggtgttagttttcataa 42449763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 23062451 - 23062514
Alignment:
Q  323 acaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||| |||  || ||||||||||||||||||||||||||||||||||| |||||||||    
T  23062451 acaagtaagttattttatttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataa 23062514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 9042271 - 9042232
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttcctt 341  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  9042271 ccaaatttcatcaattaattcacaagtaagttctttcctt 9042232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 34393995 - 34394057
Alignment:
Q  92 acaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaac 154  Q
    |||||||||| ||| |||| ||| |||||||||| ||||||||||||| || |||||||||||    
T  34393995 acaatgaaacatttttattgacacaagtaaaatacgtaaatgcctccagcggcagttaacaac 34394057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 256 - 387
Target Start/End: Original strand, 1550772 - 1550902
Alignment:
Q  256 aaatataaccaacaatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgca 355  Q
    |||||||||| | |||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||    
T  1550772 aaatataaccgaaaatcacccaaacttcaatttgctccaaaatcatccaaatttcatcaataatt-cacaagtaagttattttcttcctatttacatgca 1550870  T
Q  356 atgtagtttgtttagggtgttagttttcataa 387  Q
    |||||| ||||||||||| |||||||||||||    
T  1550871 atgtagattgtttagggtattagttttcataa 1550902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 44119242 - 44119158
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcata 386  Q
    |||| |||| |||| || || ||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44119242 ccaactttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcata 44119158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 23877952 - 23878010
Alignment:
Q  329 aagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  23877952 aagttcttttcttcctatttacatgcaatgtagattgtttagggtgttagtttttataa 23878010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 20495402 - 20495294
Alignment:
Q  269 aatcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgttt 368  Q
    |||||||||||| |  ||||||  ||||||||||||| ||   |||| ||  |||||||||||| | || | ||||||||||||||||||||| ||||||    
T  20495402 aatcacccaaaccttcatttgcacgaaaatcatccaatttgattcaactaaatcacaagtaagtacctttcctcctatttacatgcaatgtaggttgttt 20495303  T
Q  369 agggtgtta 377  Q
    |||||||||    
T  20495302 agggtgtta 20495294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 40494161 - 40494077
Alignment:
Q  74 tagaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgtt 158  Q
    |||||||||| |||| ||||||||||| ||| ||||| ||| ||||||||||  |||||  | ||| ||||||||||||||||||    
T  40494161 tagaaaattgattttctgacaatgaaaacttcctattgacacaagtaaaatacttaaatatccccatcgacagttaacaactgtt 40494077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 23718522 - 23718470
Alignment:
Q  321 tcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggt 373  Q
    |||||| ||||| | || ||||||||||||||||||||||| |||||||||||    
T  23718522 tcacaaataagtacctttcttcctatttacatgcaatgtaggttgtttagggt 23718470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 42100549 - 42100502
Alignment:
Q  339 cttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||    
T  42100549 cttcctatttacatgcaatgtaggttatttagggtgtta-ttttcataa 42100502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 41270383 - 41270304
Alignment:
Q  75 agaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaac 154  Q
    ||||||||| |||| ||||| |||||  ||  |||| ||| |||||||||| ||||||||||| | ||||||||||||||    
T  41270383 agaaaattgcttttttgacagtgaaaatttcatattgacacaagtaaaatacgtaaatgcctctagcgacagttaacaac 41270304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 5614045 - 5614141
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5614045 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtctgtttagggtgttagttttcataagtttgagcaaa 5614141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 1259906 - 1259813
Alignment:
Q  305 aatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaa 398  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  1259906 aatttcttcaattaattcacaagtaagttctttccttcctatttatatgcaatgtagtttgtttagggtgttagtttttataattttgagcaaa 1259813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 19273541 - 19273473
Alignment:
Q  305 aatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggt 373  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  19273541 aatttcttcaattaattcacaagtaagttttttccttcatatttacatgcaatgtagtttgtttagggt 19273473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 5620836 - 5620757
Alignment:
Q  75 agaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaac 154  Q
    |||||||||||||| ||||||||||| ||| ||||| ||| ||||||| || ||||||||| ||| || |||||||||||    
T  5620836 agaaaattgtttttctgacaatgaaaacttcctattgacacaagtaaactacgtaaatgcccccagcggcagttaacaac 5620757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 31385559 - 31385644
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||| |||| || || ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31385559 ccaaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcataa 31385644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 42465173 - 42465089
Alignment:
Q  303 caaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    |||||||| |||| || || ||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  42465173 caaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgaaatgtaggttgtttagggtgttagttttcataa 42465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 46201021 - 46200928
Alignment:
Q  293 gaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||| || | |||| ||  |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  46201021 gaaaatcatccaatttgcctcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataa 46200928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 13706360 - 13706421
Alignment:
Q  325 aagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||| |||  || ||||||||||||||||||||||||||||||||||| |||||||||    
T  13706360 aagtaagttattttgtttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataa 13706421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 4911548 - 4911638
Alignment:
Q  70 aaaatagaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgttgg 160  Q
    |||| |||||||||||||| ||||||||||| |||  |||| ||| |||||||||||  |||||||  || |||| ||||||||| |||||    
T  4911548 aaaaaagaaaattgtttttttgacaatgaaaacttcatattgacacaagtaaaatattaaaatgccatcagcgacggttaacaaccgttgg 4911638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 18239663 - 18239765
Alignment:
Q  271 tcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 370  Q
    |||||||||| |  ||||||  ||||||||||||| || | |||| ||  |||||||||||| | || | |||||||||| |||||||||| ||||||||    
T  18239663 tcacccaaaccttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcatcctatttacttgcaatgtaggttgtttag 18239762  T
Q  371 ggt 373  Q
    |||    
T  18239763 ggt 18239765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 15292625 - 15292541
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||  |||| || || ||||||||||| |||  ||  |||||||||||| ||||||||||||||||||||| |||||||||    
T  15292625 ccaaatttgttcaagtaattaacaagtaagttattttatttttatttacatgcattgtagtttgtttagggtgtta-ttttcataa 15292541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 27108906 - 27108852
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaa 356  Q
    ||||||||| |||| || || ||||||||||| ||| ||||||||||||||||||    
T  27108906 ccaaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaa 27108852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 31388033 - 31387947
Alignment:
Q  75 agaaaattgtttttgtgacaatgaaacctttctattcacagaagtaaaatatgtaaatgcctccaacgacagttaacaactgttgga 161  Q
    ||||||||| |||| ||| |||||||  ||  |||| ||| ||||||||||   ||||||||||| || ||||||||||||||||||    
T  31388033 agaaaattgcttttatgataatgaaaatttcatattgacataagtaaaatactaaaatgcctccagcggcagttaacaactgttgga 31387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 42058471 - 42058403
Alignment:
Q  302 ccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 370  Q
    ||||||||  |||| || || ||||||||||| |||  || |||||||||||||| |||||||||||||    
T  42058471 ccaaatttgttcaagtaattaacaagtaagttattttatttctatttacatgcaacgtagtttgtttag 42058403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 387
Target Start/End: Complemental strand, 1922 - 1807
Alignment:
Q  271 tcacccaaacttcaatttgcttgaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 370  Q
    |||||||||| |  ||||||  ||||||||||||| || | |||| ||  |||||||||||| | || ||||||||||||||||||||||| ||||||||    
T  1922 tcacccaaaccttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttag 1823  T
Q  371 ggtgttagttttcataa 387  Q
    ||||||| |||||||||    
T  1822 ggtgtta-ttttcataa 1807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 86751 - 86664
Alignment:
Q  305 aatttcatcaattatttcacaagtaag-----ttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    |||||| ||||||| ||||||||||||     |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  86751 aatttcttcaattaattcacaagtaagctcttttcttttcttcctatttacatacaatgtaggttgtttagggtgttagttttcataa 86664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1813 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 702 - 609
Alignment:
Q  293 gaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||| || | |||| || || ||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  702 gaaaatcatccaatttgcttcaagtaattaacaagtaagttattttctttctatttacatgcaatgtagtttgtttaggatgtta-ttttcataa 609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 28492 - 28399
Alignment:
Q  293 gaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||| || | |||| ||  |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  28492 gaaaatcatccaatttgcttcaactaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataa 28399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 44352 - 44445
Alignment:
Q  293 gaaaatcatccaaatttcatcaattatttcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 387  Q
    ||||||||||||| || | |||| ||  |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  44352 gaaaatcatccaatttgcttcaactaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataa 44445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University