View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_11 (Length: 441)
Name: NF19264_low_11
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 7019904 - 7019480
Alignment:
| Q |
1 |
tctttagacttgggttgatctatcttcttaatttgtctccatggatggaatataattgggctcattggttggtcgttgaatttcatcctcattcctcacc |
100 |
Q |
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| T |
7019904 |
tctttagacttgggttgatctatcttcttaatttgtctccatggatggaatataattgggctcattggttggtcgttgaatttcatcctcattcatcacc |
7019805 |
T |
|
| Q |
101 |
aacagttttgaatctaatcatggttatttttataacattaaaaatatcaacaagactaacagaatatgttgctgatagcttatgttaattatttggtcta |
200 |
Q |
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| T |
7019804 |
aacagttttgaa----atcatggttatttttataacattaaaaatatcagcaagactaacagaatatgttgctgatagcttatgttaattatttggtcta |
7019709 |
T |
|
| Q |
201 |
aagttagaagacttattcacaacttttcaacaaaaaagagaggaaaaaatgtcgacaaagtgtattgtttgatttgaaccagttcgttttttttggttgt |
300 |
Q |
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| T |
7019708 |
aagttagaagacttattcacaacttttcaacaaaaaagagaggaaaaaatgttgacaaagtgtattgtttgatttgaaccagttcgttttttttggctgt |
7019609 |
T |
|
| Q |
301 |
gcacacac---nnnnnnnnnngtaatgcccaagcatgggtcaaaatcctttagaattacgacagtatggcaacatatttttcagtacaaacaagaaaaaa |
397 |
Q |
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| T |
7019608 |
gtacacactttttttttttttgtaatgcccaagcatgggtcaaaatcctttagaattacgacagtatggcaacatatttttcagtacaaacaagaaaaat |
7019509 |
T |
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| Q |
398 |
tttgcacggtggtttttgtttgaaggaga |
426 |
Q |
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| T |
7019508 |
tttgcacggtggtttttgtttgaaggaga |
7019480 |
T |
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