View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19264_low_13 (Length: 423)

Name: NF19264_low_13
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19264_low_13
NF19264_low_13
[»] chr2 (21 HSPs)
chr2 (19-414)||(44614345-44614740)
chr2 (183-395)||(44623510-44623722)
chr2 (33-196)||(44623751-44623914)
chr2 (70-180)||(39458954-39459064)
chr2 (46-152)||(39473637-39473743)
chr2 (323-413)||(39601861-39601951)
chr2 (44-180)||(39137521-39137657)
chr2 (216-286)||(39422491-39422561)
chr2 (91-180)||(39152307-39152396)
chr2 (34-152)||(39415040-39415158)
chr2 (49-180)||(39487723-39487854)
chr2 (216-286)||(39136281-39136351)
chr2 (325-415)||(39214730-39214820)
chr2 (46-152)||(39422018-39422124)
chr2 (220-286)||(39458209-39458275)
chr2 (218-282)||(39129487-39129551)
chr2 (216-286)||(39151898-39151968)
chr2 (327-381)||(39160992-39161046)
chr2 (327-381)||(39208148-39208202)
chr2 (36-78)||(39215415-39215457)
chr2 (216-286)||(39488192-39488262)
[»] chr8 (3 HSPs)
chr8 (87-196)||(40347398-40347507)
chr8 (45-311)||(44951213-44951476)
chr8 (183-302)||(40347250-40347369)
[»] chr7 (2 HSPs)
chr7 (44-180)||(19807471-19807607)
chr7 (216-286)||(19806642-19806712)
[»] chr5 (1 HSPs)
chr5 (244-284)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 44614740 - 44614345
Alignment:
Q  19 tttgtttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614740 tttgtttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattcct 44614641  T
Q  119 tttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctcctt 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614640 tttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctcctt 44614541  T
Q  219 attttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaatgannnnnnn 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||           
T  44614540 attttctagctctttgcagcatttctcaatatctctctttatagaccgcaattgcctctcttctactttttgtccattgcattcctcaaatgattttttt 44614441  T
Q  319 aacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44614440 aacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctgaccttttatttatattcaacgaaggaatatcatcttcatct 44614345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 183 - 395
Target Start/End: Complemental strand, 44623722 - 44623510
Alignment:
Q  183 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 282  Q
    |||||||| ||||| ||||||||| | ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44623722 cttttcagtctcaaattccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttct 44623623  T
Q  283 actttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttat 382  Q
    |||| |||||| ||||||||| | |||||       ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||| ||||||    
T  44623622 acttgttgtccgttgcattccgcgaatgatttttttaacgatgcaagttctttcctcagcatggaaaatgaattatcagctgattttcctggctttttat 44623523  T
Q  383 ttatattcaacga 395  Q
    |||| ||||||||    
T  44623522 ttatgttcaacga 44623510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 44623914 - 44623751
Alignment:
Q  33 tttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcg 132  Q
    ||||||| || ||||||||||||| |||| ||| ||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  44623914 tttcacttgaactttaaattcctcttcttttgattggaactccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcg 44623815  T
Q  133 aaatgcttcttttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaa 196  Q
    |||| | | |||||||||||||||||| |||  |||||||| ||||||||||||| ||| ||||    
T  44623814 aaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa 44623751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 39459064 - 39458954
Alignment:
Q  70 aactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggc 169  Q
    ||||||||||||  || |||||||| ||||||||||||||| |  |||||  | | ||||||||||||||||||||||||||| || ||||||||| |||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  170 cttcaaattca 180  Q
    |||||||||||    
T  39458964 cttcaaattca 39458954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
Q  46 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 145  Q
    |||||||||||||||| |||||||||||||||||||  ||  | ||||| ||||||||||||||| |  |||||  || |||||||||||||||||||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 39473736  T
Q  146 ctgattc 152  Q
    |||||||    
T  39473737 ctgattc 39473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 39601951 - 39601861
Alignment:
Q  323 atgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatc 413  Q
    |||||||  ||||| ||||||||||||||||  |||||| |||||||| |||||||||| ||| || |||| |||||||||||||||||||    
T  39601951 atgcaaggcctttcttcagcgaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcatc 39601861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 39137657 - 39137521
Alignment:
Q  44 ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 143  Q
    |||| |||||||| |||| ||||||||||||||||| |  |  |||| ||| |||||||| || |||||  | ||| ||||||||||| |||||||||||    
T  39137657 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagctgcttctgtcggctctcaaaatgcttctt 39137558  T
Q  144 ttctgattcaaagtccttcaccaggccttcaaattca 180  Q
    ||| ||||| |  |||||||||  |||||||||||||    
T  39137557 ttcagattcgagttccttcaccctgccttcaaattca 39137521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 39422491 - 39422561
Alignment:
Q  216 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 286  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||  | ||||||||||||    
T  39422491 cttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 39152396 - 39152307
Alignment:
Q  91 aattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattca 180  Q
    |||||||||||  ||||||| |  |||||  ||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  39152396 aattccttttccattgattcgagctccttcagtcggctctcgaaatgcttcttttctgattccagcttcttcacctggccttcaaattca 39152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 39415040 - 39415158
Alignment:
Q  34 ttcactcgacctttaaattcctcctcttctgactggaactccttcactc-ttctttcaaattccttttcttttgattcaaattccttttgtcggctctcg 132  Q
    |||||| | ||||| | ||||||||||| |||||||||||| |||| || |||||| || ||  ||||||||||||||||  |||||  || |||| |||    
T  39415040 ttcacttgtcctttgagttcctcctcttttgactggaactctttcattcgttctttgaa-ttgattttcttttgattcaagctccttcagttggctttcg 39415138  T
Q  133 aaatgcttcttttctgattc 152  Q
    ||||||||||||||||||||    
T  39415139 aaatgcttcttttctgattc 39415158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 39487723 - 39487854
Alignment:
Q  49 aattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctg 148  Q
    ||||||||||||| ||||||||||||||||| |  |  ||||  || |||||||| || ||| |  ||||| |||||||||||  ||||||||||||| |    
T  39487723 aattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttcttgtgcttcgagctccttctgtcggctctcagaatgcttcttttcag 39487822  T
Q  149 attcaaagtccttcaccaggccttcaaattca 180  Q
    ||||    ||||||||| ||||||||||||||    
T  39487823 attcgggctccttcacccggccttcaaattca 39487854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 39136351 - 39136281
Alignment:
Q  216 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 286  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  39136351 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 39136281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 39214820 - 39214730
Alignment:
Q  325 gcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatctc 415  Q
    ||||| |||||| ||||||||||||||||  |||  | ||||||||||||||||||| ||| || | || || ||||||||||||||||||    
T  39214820 gcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatctc 39214730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 39422018 - 39422124
Alignment:
Q  46 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 145  Q
    |||||||||||||||| |||| |||||||||||| |  ||  || |||| ||||||| ||||||| |  |||||  ||||||| || |||||||||||||    
T  39422018 ttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttctttt 39422117  T
Q  146 ctgattc 152  Q
    |||||||    
T  39422118 ctgattc 39422124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 39458275 - 39458209
Alignment:
Q  220 ttttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 286  Q
    ||||| || ||||||||||| | |||||||||||||||||| ||| |||||| | ||||||||||||    
T  39458275 ttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctactt 39458209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 39129551 - 39129487
Alignment:
Q  218 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 282  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||| | ||||||||    
T  39129551 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 39151968 - 39151898
Alignment:
Q  216 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 286  Q
    ||||||||| ||||||||| ||| || |||||||| ||||||||| ||| ||| || | ||||||||||||    
T  39151968 cttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctactt 39151898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 39161046 - 39160992
Alignment:
Q  327 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 381  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39161046 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39160992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 39208148 - 39208202
Alignment:
Q  327 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 381  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39208148 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39208202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 39215457 - 39215415
Alignment:
Q  36 cactcgacctttaaattcctcctcttctgactggaactccttc 78  Q
    |||| |||||||||||||||||| || ||||||||||||||||    
T  39215457 cacttgacctttaaattcctcctgttttgactggaactccttc 39215415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 39488192 - 39488262
Alignment:
Q  216 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 286  Q
    ||||||||| ||||||||  |||| | ||||| |||||||||||||||| ||| || || |||||||||||    
T  39488192 cttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctactt 39488262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 40347507 - 40347398
Alignment:
Q  87 ttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattcacccttt 186  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |   |||||||||||||||||||||| ||| | ||||||||||||||||    
T  40347507 ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt 40347408  T
Q  187 tcagactcaa 196  Q
    | ||| ||||    
T  40347407 ttagattcaa 40347398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 311
Target Start/End: Original strand, 44951213 - 44951476
Alignment:
Q  45 tttaaattcctcctcttctgactggaactccttcactc-ttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 143  Q
    ||||||||||||||||| |||||| ||||||||| ||  |||||| || ||  |||||| |||||||||| |||||   |||| ||||||||||    ||    
T  44951213 tttaaattcctcctcttttgactgaaactccttctcttgttctttgaattta-ttttctcttgattcaaactccttcattcggatctcgaaatgtgcttt 44951311  T
Q  144 ttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttc 243  Q
    ||| |||||||| ||||| ||  ||||   || |  |  ||||| |||||||||||| ||||| | ||||||||||||||| ||||||| |||||| |||    
T  44951312 ttcagattcaaactcctttactcggccaataagtatattctttttagactcaagttcattaacttgggtctccttattttcaagctcttcgcagcacttc 44951411  T
Q  244 tcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaatga 311  Q
    | ||||||||||||||| | ||||||| |||||||||||||   ||| || |||||||||||||||||    
T  44951412 ttaatatctctctttatcggccgcaattgcctctcttctac---ttgcccgttgcattcctcaaatga 44951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 40347369 - 40347250
Alignment:
Q  183 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 282  Q
    ||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| || ||||||| | || |||| || ||||||||||||||| ||| |    
T  40347369 cttttcagattcaagtttcttaacttgggtctccatattttctagctctttgcaacacttctcaacagctttcttaatggaccgcaatcgcctcactttt 40347270  T
Q  283 actttttgtccattgcattc 302  Q
    |||| ||||| |||||||||    
T  40347269 acttgttgtctattgcattc 40347250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 19807607 - 19807471
Alignment:
Q  44 ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 143  Q
    |||| |||||||| |||| ||||||||||||||||| |  |  |||| ||| |||||||| || ||| |    ||| |||||||||||||||||||||||    
T  19807607 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgagccgcttctgtcggctctcgaaatgcttctt 19807508  T
Q  144 ttctgattcaaagtccttcaccaggccttcaaattca 180  Q
    ||| ||||| |  |||||| || ||||||||||||||    
T  19807507 ttcagattcgagctccttcgcccggccttcaaattca 19807471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 19806712 - 19806642
Alignment:
Q  216 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 286  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  19806712 cttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 19806642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 17058883 - 17058843
Alignment:
Q  244 tcaatatctctctttatagaccgcaatcgcctctcttctac 284  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  17058883 tcaatatctctctttatagactgcaatcgcttttcttctac 17058843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University