View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19264_low_15 (Length: 357)
Name: NF19264_low_15
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 41042055 - 41041726
Alignment:
| Q |
18 |
ataccgtcatttattatattttgattttgttctgttgcattgcagttataccttgtttagaatgtttgatgatatagtatttctagcaaaaggtggtctt |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41042055 |
atactgtcatttattatattttgattttgttctgttgcattgcagttataccttgtttagaatgtttgatgatatagtatttctagcaaaaggtggtctt |
41041956 |
T |
|
| Q |
118 |
acagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaatccctgtaccggatcgcgttaatcctccggaccattttattgata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41041955 |
acagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaatccctgtaccggatcgcgttaatcctccggaccattttattgata |
41041856 |
T |
|
| Q |
218 |
ttctggaaggtttagagaaaccaacttcaggtctaactattgaaacacttcctgttagatggatgcttcataatggatacccagtaccaccagatatgct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41041855 |
ttctggaaggtttagagaaaccaacttcaggtctaactattgaaacacttcctgttagatggatgcttcataatggatacccagtaccaccagatatgct |
41041756 |
T |
|
| Q |
318 |
tcatttggctgataaaatcgccacttcttc |
347 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
41041755 |
tcatttggctgataaaatcgccactccttc |
41041726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 28088694 - 28088952
Alignment:
| Q |
64 |
tataccttgtttagaatgtttgatgatatagtatttctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctg |
163 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||||| || || || ||||||||||||||||||||| | | |
|
|
| T |
28088694 |
tatactttgttcagaatgtttgatgatataatatttctagcaaaaggtggccttactgcatatcacggacctgtaaaaaaagtagaagaatactttgccg |
28088793 |
T |
|
| Q |
164 |
gcattggaatccctgtaccggatcgcgttaatcctccggaccattttattgatattctggaaggtttagagaaaccaacttcaggtctaactattgaaac |
263 |
Q |
| |
|
||||||| |||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||| | |||| | ||| | || |
|
|
| T |
28088794 |
gcattggtatccctgttcctgatcgcgtgaatcctccagaccattttattgacattctggaaggtttagtgaaaccaaatgaaggtgtgacttatcaaca |
28088893 |
T |
|
| Q |
264 |
acttcctgttagatggatgcttcataatggatacccagtaccaccagatatgcttcatt |
322 |
Q |
| |
|
||| ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28088894 |
actacctgtcagatggatgattcataatggttacccagtaccaccagatatgcttcatt |
28088952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 21493470 - 21493564
Alignment:
| Q |
79 |
atgtttgatgatatagtatttctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaat |
173 |
Q |
| |
|
|||||||||||| | || | ||||| ||||| |||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
21493470 |
atgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcatcggaat |
21493564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University