View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19264_low_16 (Length: 349)
Name: NF19264_low_16
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_16 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 87840 - 87509
Alignment:
| Q |
1 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87840 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
87741 |
T |
|
| Q |
101 |
gattgtgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
87740 |
gattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatat |
87641 |
T |
|
| Q |
201 |
tcataggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaatttt |
300 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87640 |
tcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaatttt |
87541 |
T |
|
| Q |
301 |
ggagtaagaactgaaattcacaggctcacaag |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
87540 |
ggagtaagaactgaaattcacaggctcacaag |
87509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 95851 - 95525
Alignment:
| Q |
6 |
cctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
105 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95851 |
cctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
95752 |
T |
|
| Q |
106 |
tgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcata |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
95751 |
tgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcata |
95652 |
T |
|
| Q |
206 |
ggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagt |
305 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
95651 |
gggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagt |
95552 |
T |
|
| Q |
306 |
aagaactgaaattcacaggctcacaag |
332 |
Q |
| |
|
||| |||||||||||| |||||||||| |
|
|
| T |
95551 |
aagcactgaaattcaccggctcacaag |
95525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 40878443 - 40878774
Alignment:
| Q |
1 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878443 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
40878542 |
T |
|
| Q |
101 |
gattgtgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
40878543 |
gattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatat |
40878642 |
T |
|
| Q |
201 |
tcataggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaatttt |
300 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878643 |
tcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaatttt |
40878742 |
T |
|
| Q |
301 |
ggagtaagaactgaaattcacaggctcacaag |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40878743 |
ggagtaagaactgaaattcacaggctcacaag |
40878774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 40870431 - 40870757
Alignment:
| Q |
6 |
cctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
105 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870431 |
cctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
40870530 |
T |
|
| Q |
106 |
tgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcata |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
40870531 |
tgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcata |
40870630 |
T |
|
| Q |
206 |
ggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagt |
305 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40870631 |
gggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagt |
40870730 |
T |
|
| Q |
306 |
aagaactgaaattcacaggctcacaag |
332 |
Q |
| |
|
||| |||||||||||| |||||||||| |
|
|
| T |
40870731 |
aagcactgaaattcaccggctcacaag |
40870757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
38 |
cgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
127 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||| ||| || || |||||||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 28346848 - 28346744
Alignment:
| Q |
7 |
ctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgt |
106 |
Q |
| |
|
||||||||| || | ||| | ||| ||||||||||| |||| ||| || |||||||| |||||| |||||| || ||||||||||| ||||||||||| |
|
|
| T |
28346848 |
ctgaagagggggatcagccgcataatccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattga |
28346749 |
T |
|
| Q |
107 |
gtcaa |
111 |
Q |
| |
|
||||| |
|
|
| T |
28346748 |
gtcaa |
28346744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 42730243 - 42730140
Alignment:
| Q |
23 |
gctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaa |
122 |
Q |
| |
|
|||||||| ||||| | |||||||| || || ||||| ||||||||| |||||| || ||||| |||||||||||||||||||| || || || |||| |
|
|
| T |
42730243 |
gctgaataatccaacctaggaaaaatagtctcagcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaa |
42730144 |
T |
|
| Q |
123 |
aaga |
126 |
Q |
| |
|
|||| |
|
|
| T |
42730143 |
aaga |
42730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
| Q |
73 |
agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
127 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
21715696 |
agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University