View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_19 (Length: 325)
Name: NF19264_low_19
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 35284524 - 35284363
Alignment:
| Q |
1 |
atgaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgtgctgttttcttttactttctttcttaaacggcct |
100 |
Q |
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| T |
35284524 |
atgaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgcgctgttttcttttactttctttcttaaacggcct |
35284425 |
T |
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| Q |
101 |
cttatccgtattctatgacatgcatgtatatctctataggcaacagatgcaaggatcctccg |
162 |
Q |
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| T |
35284424 |
cttatccgtattctatggcatgcatgtatatctctataggcaacagatgcaaggatcctccg |
35284363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 159 - 315
Target Start/End: Complemental strand, 35242124 - 35241960
Alignment:
| Q |
159 |
tccggtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatattactcaatt |
250 |
Q |
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| T |
35242124 |
tccggtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttagtttcatatatagtgcaacgcagtcatatattactcaatt |
35242025 |
T |
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| Q |
251 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggattttct |
315 |
Q |
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| T |
35242024 |
ttcaggccccaaacattggtgctataatggacaatacccctcaaatgattcgggatggatattct |
35241960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 35284362 - 35284278
Alignment:
| Q |
231 |
tattcatatattactcaattttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggattttct |
315 |
Q |
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| T |
35284362 |
tattcatatattactcaattttcaggccccaaacattggtgctataatggacaatacctatcaaataattcgggatggatattct |
35284278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 35272262 - 35272103
Alignment:
| Q |
163 |
gtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatatta----ctcaatt |
250 |
Q |
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| T |
35272262 |
gtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttggtttcatatatagtgcaacacagtcatatattaattactcaatt |
35272163 |
T |
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| Q |
251 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggat |
310 |
Q |
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| T |
35272162 |
ttcaggcccaaaacgttggtcctataatggaaaatacccctcaaataattccggatggat |
35272103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 35247754 - 35247606
Alignment:
| Q |
166 |
agagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcat----agtgcaacctattcatatattactcaattttcaggc |
257 |
Q |
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| T |
35247754 |
agagtcaggttatatataatggctaaatgttcaatgttaatcaatggttcttggtttcattcatagcgcaacacactcatatattacttaattttcaggc |
35247655 |
T |
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| Q |
258 |
cccaaacattggtcctataatggacaatacctatcaaataattcgggat |
306 |
Q |
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|||||| ||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
35247654 |
cccaaaagttggtgctacaatggacaatacccctcaaataattcgggat |
35247606 |
T |
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