View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19264_low_23 (Length: 280)
Name: NF19264_low_23
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_23 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5173121 - 5172864
Alignment:
| Q |
1 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
5173121 |
atattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccac |
5173022 |
T |
|
| Q |
101 |
tttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaatg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| || | | |||||||| |
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| T |
5173021 |
tttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataagtgaaaatg |
5172922 |
T |
|
| Q |
201 |
atccttgcatgtaatttccatagagtgataagaatcccagagatgtgagattactaat |
258 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |
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|
| T |
5172921 |
atccttgcatgtaattttcatagagtgataagaatgtcaaggatgtgagattactaat |
5172864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 5160204 - 5159948
Alignment:
| Q |
2 |
tattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccact |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
5160204 |
tattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccact |
5160105 |
T |
|
| Q |
102 |
ttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaatga |
201 |
Q |
| |
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||||| ||||||||||||||| ||||||| | ||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5160104 |
ttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatga |
5160005 |
T |
|
| Q |
202 |
tccttgcatgtaatttccatagagtgataagaatcccagagatgtgagattactaat |
258 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||| ||||||||||| ||||| |
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|
| T |
5160004 |
tccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaat |
5159948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5195847 - 5195590
Alignment:
| Q |
1 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
5195847 |
atattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttaggaaaccac |
5195748 |
T |
|
| Q |
101 |
tttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaatg |
200 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| | ||||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
5195747 |
tttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatg |
5195648 |
T |
|
| Q |
201 |
atccttgcatgtaatttccatagagtgataagaatcccagagatgtgagattactaat |
258 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||| ||||||||||| ||||| |
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|
| T |
5195647 |
atccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaat |
5195590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4842404 - 4842655
Alignment:
| Q |
1 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| | | |||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
4842404 |
atattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccac |
4842503 |
T |
|
| Q |
101 |
tttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaatg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||| |||||||||||| || | | |||||||| |
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|
| T |
4842504 |
tttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataagtgaaaatg |
4842603 |
T |
|
| Q |
201 |
atccttgcatgtaatttccatagagtgataagaatcccagagatgtgagatt |
252 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
4842604 |
atccttgcatgtaattttcatagagtgataagaatgtcaaggatgtgagatt |
4842655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5214010 - 5213756
Alignment:
| Q |
1 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| || |||||| |
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|
| T |
5214010 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatttgggtaaccac |
5213911 |
T |
|
| Q |
101 |
tttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaatg |
200 |
Q |
| |
|
||||| ||||||||||||||| | | ||| ||| ||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
5213910 |
tttgtcttttcagtttcaatgtttgcaccaatgc---tttgtgatgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatg |
5213814 |
T |
|
| Q |
201 |
atccttgcatgtaatttccatagagtgataagaatcccagagatgtgagattactaat |
258 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| || |||| ||||||||||||||||| |
|
|
| T |
5213813 |
atccttgcatgtaatttccaaagagggataagtatgccagtgatgtgagattactaat |
5213756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5182450 - 5182196
Alignment:
| Q |
1 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||| ||||| ||||||||||||||| ||||||||| |
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|
| T |
5182450 |
atattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccac |
5182351 |
T |
|
| Q |
101 |
tttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaatg |
200 |
Q |
| |
|
||||| |||||||||||||| | |||||| ||||||| || ||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
5182350 |
tttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgctcaatgaaaatg |
5182254 |
T |
|
| Q |
201 |
atccttgcatgtaatttccatagagtgataagaatcccagagatgtgagattactaat |
258 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||| ||||||||||| ||||| |
|
|
| T |
5182253 |
atccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaat |
5182196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4856881 - 4857101
Alignment:
| Q |
1 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| ||||| ||||| ||||||||||||||| ||||||||| |
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|
| T |
4856881 |
atattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccac |
4856980 |
T |
|
| Q |
101 |
tttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaatg |
200 |
Q |
| |
|
||||| |||||||||||||| | |||||| ||||||| || ||||||||| |||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
4856981 |
tttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggtcaatgaaaatg |
4857077 |
T |
|
| Q |
201 |
atccttgcatgtaatttccataga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4857078 |
atccttgcatgtaatttccataga |
4857101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 7142381 - 7142256
Alignment:
| Q |
4 |
ttgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttgcaagaaagagtgacttcaattgaaatttaggaaaccacttt |
103 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||||||| ||||| |||||||||| || | | |||| | | ||||||| |||||||||||||| |
|
|
| T |
7142381 |
ttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaacata-agtgtatgtagttgaaatctaggaaaccacttt |
7142283 |
T |
|
| Q |
104 |
gttctttcagtttcaatgtgtactcca |
130 |
Q |
| |
|
|| |||||||||||| |||||||||| |
|
|
| T |
7142282 |
gtattttcagtttcaacgtgtactcca |
7142256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 5202887 - 5202773
Alignment:
| Q |
100 |
ctttgttctttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatacagatgctgaagattggaatgattagccaaagtgctcaatgaaaat |
199 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||| |||| | | || |||||||| |||| |||||| || | ||||||||||||||||| | ||||||| |
|
|
| T |
5202887 |
ctttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaat |
5202791 |
T |
|
| Q |
200 |
gatccttgcatgtaattt |
217 |
Q |
| |
|
| ||||||| ||| |||| |
|
|
| T |
5202790 |
ggtccttgcgtgtgattt |
5202773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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