View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_24 (Length: 273)
Name: NF19264_low_24
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 29470741 - 29470479
Alignment:
| Q |
1 |
tacaagacattattcaatctcagaattt-aattttttaaaaaatgtaatccaaggacacaaatgttccatttttcttatcttaattggaacagttatgaa |
99 |
Q |
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| T |
29470741 |
tacaagacattattcaatctcagaattttaatttttttaaaaatgtaatccaaggacacaaatgttccatttttcttatcttaattggaacagttatgaa |
29470642 |
T |
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| Q |
100 |
acatttcccctatacatataaactaatactaataaagcaaatgcaaattttgtgtgtcatatgaaagcaattaatcaat-tctgaaaatccagcagaatt |
198 |
Q |
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| T |
29470641 |
acatttcccctatacatataaactaatactaataaagcaaatgcaaattttgtgtgtcatatgaaagcaaccaatcaatatctgaaaatccagcagaatt |
29470542 |
T |
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| Q |
199 |
caattatataactatatatattcctcttctttgtagttg---ttcttctaggtgtggagtgga |
258 |
Q |
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| T |
29470541 |
caattatataactatatatattcctcttctttgtagttgttcttcttctaggtgtggagtgga |
29470479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 29436756 - 29436694
Alignment:
| Q |
184 |
aaatccagcagaattcaattatataactatatatattcctcttctttgtagttgttcttctag |
246 |
Q |
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| T |
29436756 |
aaatccagcagagtttaattataaaactatatatattcctcttctttgtggttgttcttctag |
29436694 |
T |
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