View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_25 (Length: 272)
Name: NF19264_low_25
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 8309307 - 8309529
Alignment:
| Q |
37 |
ccgataaataggattggaaatattacgaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcgtctgtcacgtcgcaatgg |
136 |
Q |
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| T |
8309307 |
ccgataaataggattggaaatactacgaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcatctgtcacgtcacaatgg |
8309406 |
T |
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| Q |
137 |
atgtaggtgcacctttggttgcctatggacgcagctacttgatttccaagctcatcttggatgtcagcgatcacaaccacacgcgtgccttcgttggcga |
236 |
Q |
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| T |
8309407 |
atgtaggtgcacctttggttgcctatggacgcagctacttgatttccaagctcatcttggatgtcagcaatcacaaccacacgcgtgccttcgttcgcga |
8309506 |
T |
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| Q |
237 |
agacacgcgccgtggcttcacct |
259 |
Q |
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| T |
8309507 |
agacacgcgccgtggcttcacct |
8309529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 40 - 255
Target Start/End: Original strand, 8259763 - 8259978
Alignment:
| Q |
40 |
ataaataggattggaaatattacgaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcgtctgtcacgtcgcaatggatg |
139 |
Q |
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| T |
8259763 |
ataaataggattacaaatattatgaacctgtccataagtatctaccgttgatcgaacgagatttttgacttgatcttcatctgccacatcacaatggatg |
8259862 |
T |
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| Q |
140 |
taggtgcacctttggttgcctatggacgcagctacttgatttccaagctcatcttggatgtcagcgatcacaaccacacgcgtgccttcgttggcgaaga |
239 |
Q |
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| T |
8259863 |
taagtgcacctttggatgccaatggatgcagctacttgatttccaagctcatcttggatgtccgcgatcacaaccacgcgcacgccttcgttagcaaaga |
8259962 |
T |
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| Q |
240 |
cacgcgccgtggcttc |
255 |
Q |
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| T |
8259963 |
cacgtgccgtggcttc |
8259978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 55 - 258
Target Start/End: Original strand, 8257431 - 8257634
Alignment:
| Q |
55 |
aatattacgaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcgtctgtcacgtcgcaatggatgtaggtgcacctttgg |
154 |
Q |
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| T |
8257431 |
aatattatcaacctgtccataagtatcaaccgttgattgaactaggtttttgacttgatcttcatctgtgacatcgcagtggatgtaagtgcacctttgg |
8257530 |
T |
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| Q |
155 |
ttgcctatggacgcagctacttgatttccaagctcatcttggatgtcagcgatcacaaccacacgcgtgccttcgttggcgaagacacgcgccgtggctt |
254 |
Q |
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| T |
8257531 |
ctgccaatggatgcagctacttgatttccaagctcatcttggatgtcggcgatcacaaccacgcgcacgccttcattagcaaagacacgtgccgtggctt |
8257630 |
T |
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| Q |
255 |
cacc |
258 |
Q |
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|||| |
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| T |
8257631 |
cacc |
8257634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 44 - 258
Target Start/End: Original strand, 8290027 - 8290240
Alignment:
| Q |
44 |
ataggattggaaatattacgaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcgtctgtcacgtcgcaatggatgtagg |
143 |
Q |
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| T |
8290027 |
ataggataggaaatattt-gaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtagg |
8290125 |
T |
|
| Q |
144 |
tgcacctttggttgcctatggacgcagctacttgatttccaagctcatcttggatgtcagcgatcacaaccacacgcgtgccttcgttggcgaagacacg |
243 |
Q |
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| T |
8290126 |
tgcacctttggttgccgatggacgtagctacttgattgccaagttcatcttggatatcagcaatcacaacatggctggcgccttcgttagcaaagacatg |
8290225 |
T |
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| Q |
244 |
cgccgtggcttcacc |
258 |
Q |
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| T |
8290226 |
cgccgtggcttcacc |
8290240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 8325367 - 8325503
Alignment:
| Q |
71 |
ccataagtattgaccgttgattgaacgagatttttaacttgatcttcgtctgtcacgtcgcaatggatgtaggtgcacctttggttgcctatggacgcag |
170 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||| || || || ||||| | ||||||||||| ||| |||| || || |||| |
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| T |
8325367 |
ccataagtattgactgttgattgaacgagatttttgacttgatcttcgttcgttacatcacaatgaacataggtgcacctgtggctgccaatagatgcag |
8325466 |
T |
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| Q |
171 |
ctacttgatttccaagctcatcttggatgtcagcgat |
207 |
Q |
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| T |
8325467 |
ccacttcattgcccaactcatcttggatgtcggcgat |
8325503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 8262857 - 8263007
Alignment:
| Q |
65 |
acctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcgtctgtcacgtcgcaatggatgtaggtgcacctttggttgcctatgg |
164 |
Q |
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||||| ||||||| |||||| |||||||||||||||||||||||||||||||| | || | || ||||| |||||||||||| | | |||| |||| |
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| T |
8262857 |
acctgtccataagcattgacagttgattgaacgagatttttaacttgatcttcatttgctatatcacaatgaatgtaggtgcacttgcgactgccaatgg |
8262956 |
T |
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| Q |
165 |
acgcagctacttgatttccaagctcatcttggatgtcagcgatcacaacca |
215 |
Q |
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| T |
8262957 |
atgcagccacttgattgcccaactcgtcttggatgtcggcaatcaccacca |
8263007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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