View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_27 (Length: 261)
Name: NF19264_low_27
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 46009300 - 46009534
Alignment:
| Q |
9 |
gaagaatatagtgcatataatctcaactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacc |
108 |
Q |
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| T |
46009300 |
gaagaaaatagtgcatataatctcaactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacc |
46009399 |
T |
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| Q |
109 |
tctcaatacctgacttaaaagcaccaatgtttccactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttat |
208 |
Q |
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| T |
46009400 |
tctcaatatctgacttaaaagcaccaatgtttcaactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttat |
46009499 |
T |
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| Q |
209 |
caagtgcaacgacgcgggtgtgcgaatagcagagt |
243 |
Q |
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| T |
46009500 |
caagtgcaacgacgcgggtgtgcgaatagcagagt |
46009534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 13114257 - 13114444
Alignment:
| Q |
33 |
aactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatacctgacttaaaagcac |
132 |
Q |
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| T |
13114257 |
aactacatggacttgctaatgaaactccactatatccgatcaatttatgtattcaactctgaagtcatgcaaaacctctcattatccgacttaaaaacac |
13114356 |
T |
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| Q |
133 |
caatgtttccactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacga |
220 |
Q |
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| T |
13114357 |
caatttatgcactactcgagtcttgctcacatgtttcaggtcggattagaatactcgaatctggaagaccgtttatcaagtgcaacga |
13114444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 15921959 - 15922161
Alignment:
| Q |
33 |
aactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatacctgacttaaaagcac |
132 |
Q |
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|||||||||||| || | ||||| || |||||| |||| ||||| || || ||| ||||| |||| |||||| ||| ||||| | || |||||| ||| |
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| T |
15921959 |
aactacatggacttgttgatgaagcttcactatgtccggtccatttatttcttcgattctgaagctgttcaaggccttacaatatccgatttaaaaacac |
15922058 |
T |
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| Q |
133 |
caatgtttccactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcg |
232 |
Q |
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| T |
15922059 |
cgatgtttccactgctggatttgtactcgcatgttgccggtcgagttagaatagccaaatccggcagaccgtttatcaaatgcaatgatgccggtgtgcg |
15922158 |
T |
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| Q |
233 |
aat |
235 |
Q |
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||| |
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| T |
15922159 |
aat |
15922161 |
T |
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