View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_28 (Length: 260)
Name: NF19264_low_28
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 14691895 - 14691659
Alignment:
| Q |
17 |
cttagaagacatcgtcagcaattacaccaaccctgccgtcgtcgacatcaagatcggttcaagaacatggcacccacagttctctgaagattacatccgg |
116 |
Q |
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| T |
14691895 |
cttagaagacattgtcagcaattacaccaaccctgccgtcgtcgacatcaagatcggttcacgaacatggcacccacagtcctctgaagattacatccgg |
14691796 |
T |
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| Q |
117 |
aaatgcctccagaaagatcgagaatcttctagtatcaaattagggtttagaatctccggtttgaggtcagtgggtcccactaatcaattatggcagcctc |
216 |
Q |
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| T |
14691795 |
aaatgcctccagaaagatcgagaatcttctagtatcaaattagggtttagaatctccggtttgaggtcagtgggtcccactaatcaattatggcagcctc |
14691696 |
T |
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| Q |
217 |
ataaaaagtttcttatggatctatctgttgatgatgt |
253 |
Q |
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| T |
14691695 |
ataaaaagtttcttatggatctatctgttgatgatgt |
14691659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 12122376 - 12122140
Alignment:
| Q |
17 |
cttagaagacatcgtcagcaattacaccaaccctgccgtcgtcgacatcaagatcggttcaagaacatggcacccacagttctctgaagattacatccgg |
116 |
Q |
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||||||||| || ||| ||||||||||||| | || ||||||||||||||||| ||||| |||||||||| || || | ||| |||||||| || ||| |
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| T |
12122376 |
cttagaagatattgtctccaattacaccaacgccgctgtcgtcgacatcaagattggttctcgaacatggcaacctcaatcctccgaagattatattcgg |
12122277 |
T |
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| Q |
117 |
aaatgcctccagaaagatcgagaatcttctagtatcaaattagggtttagaatctccggtttgaggtcagtgggtcccactaatcaattatggcagcctc |
216 |
Q |
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| T |
12122276 |
aaatgcctccagaaagatcgagaatcttctacgataaaattagggtttagaatctctgggttgaggtctgtgggtcccagtaacaaattatggcagcctc |
12122177 |
T |
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| Q |
217 |
ataaaaagtttcttatggatctatctgttgatgatgt |
253 |
Q |
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||| |||| |||||||||||||||||| ||||||||| |
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| T |
12122176 |
atagaaagcttcttatggatctatctgctgatgatgt |
12122140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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