View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19264_low_29 (Length: 254)
Name: NF19264_low_29
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 1188962 - 1188831
Alignment:
| Q |
110 |
ttttttggttagtctgatgatctttcaattgagcctgaattatcaaaataagatattgtgttttgaacaatagctcgaaatcttgaaccttggtttgtaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1188962 |
ttttttggttagtctgatgatctttcaattgagcctgaattatcaaaataagatattgtgttttgaacaatagctagaaatcttgaaccttggtttgtaa |
1188863 |
T |
|
| Q |
210 |
tatcaatggtttgtggttttccattctgtgct |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1188862 |
tatcaatggtttgtggttttccattctgtgct |
1188831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 1194471 - 1194400
Alignment:
| Q |
165 |
ttgtgttttgaacaatagctcgaaatcttgaaccttggtttgtaatatcaatggtttgtggttttccattct |
236 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
1194471 |
ttgtgtttagaacaatagctagaaatcttggaccttagtttgtaatatcaatagtttgtggtattccattct |
1194400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 1183732 - 1183692
Alignment:
| Q |
196 |
accttggtttgtaatatcaatggtttgtggttttccattct |
236 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
1183732 |
accttagtttgtaatatcaatagtttgtggttttcctttct |
1183692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 5510464 - 5510537
Alignment:
| Q |
165 |
ttgtgttttgaacaatagctcgaaatcttgaaccttggtttgtaatatcaatggtttgtggttttccattctgt |
238 |
Q |
| |
|
|||||||||||| |||| || |||||| || ||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
5510464 |
ttgtgttttgaataatatctagaaatcctggaccttggtttgtaatatcactaaattgtggttttcctttctgt |
5510537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37324065 - 37323981
Alignment:
| Q |
1 |
tgataataaccaaaaacaaaacacggtacaaaacaatcatcacaaataagatttcaagatcaacccactttgaataattcatgtt |
85 |
Q |
| |
|
|||||||||| | ||||||||| || ||||||||||||||| | | || ||| ||||||||||||| ||||| ||| ||||||| |
|
|
| T |
37324065 |
tgataataacaagaaacaaaactcgatacaaaacaatcatccctagcaaaattgcaagatcaacccattttgagtaactcatgtt |
37323981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 10204195 - 10204165
Alignment:
| Q |
186 |
gaaatcttgaaccttggtttgtaatatcaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10204195 |
gaaatcttgaaccttggtttgtaatatcaat |
10204165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University