View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_31 (Length: 249)
Name: NF19264_low_31
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_31 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 25675484 - 25675250
Alignment:
| Q |
19 |
actgtggaacatcacagtcaaaccattttcttgtaaatgttcaatagattgttcttaagctctaaaacatagt--tatacatcagtgatcat--gagtga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
25675484 |
actgtggaacatcacagtcaaaccattttcttgtaaatgttcaatagattgttcttaagctctaaaacatagtattatacatcagtgatcatatgagtga |
25675385 |
T |
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| Q |
115 |
tcccattcattttcaattttacacatcccttacaagctgcctccatccttacccaccatgaaagatttccatggcttccaatttcagtctcaaacctcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25675384 |
tcccattcattttcaattttacacatcccttacaagctgcctccatccttacccaccatgaaagatttccatggcttccaatttcagtctcaaacctcaa |
25675285 |
T |
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| Q |
215 |
aatcatcttccaatcaccttaattttgcttctctc |
249 |
Q |
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| T |
25675284 |
aatcatcttccaatcaccttaattttgcttctctc |
25675250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 4854804 - 4855038
Alignment:
| Q |
19 |
actgtggaacatcacagtcaaaccattttcttgtaaatgttcaatagattgttcttaagctctaaaacatagt--tatacatcagtgatcat--gagtga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
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| T |
4854804 |
actgtggaacatcacagtcaaaccattttcttgtaaatgttcaatagattgttcttaagctctaaaacataatattatacatcagtgatcatatgagtga |
4854903 |
T |
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| Q |
115 |
tcccattcattttcaattttacacatcccttacaagctgcctccatccttacccaccatgaaagatttccatggcttccaatttcagtctcaaacctcaa |
214 |
Q |
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| T |
4854904 |
tcccattcattttcaattttacacatcccttacaagctgcctccatccttacccaccatgaaagatttccatggcttccaatttcagtctcaaacctcaa |
4855003 |
T |
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| Q |
215 |
aatcatcttccaatcaccttaattttgcttctctc |
249 |
Q |
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| T |
4855004 |
aatcatcttccaatcaccttaattttgcttctctc |
4855038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 46633819 - 46633978
Alignment:
| Q |
19 |
actgtggaacatcacagtcaaaccattttcttgtaaatgttcaata-------gattgttctta----agctctaaaacatag-----ttatacatcagt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
46633819 |
actgtggaacatcacagtcaaaccattttcttgtaaatatccaatgtcgaattgattgttcttatataagctctaaaacatagcattattatacatcagt |
46633918 |
T |
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| Q |
103 |
gatcat--gagtgatcccattcattttcaattttacacatcccttacaagctgcctccat |
160 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
46633919 |
gatcatatgagtgatcccattcgttttcaattttacacatcccttacaagctacctccat |
46633978 |
T |
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