View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19264_low_35 (Length: 240)

Name: NF19264_low_35
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19264_low_35
NF19264_low_35
[»] chr8 (5 HSPs)
chr8 (18-226)||(9379850-9380058)
chr8 (23-64)||(43208283-43208324)
chr8 (30-63)||(27120031-27120064)
chr8 (23-63)||(6950216-6950256)
chr8 (24-64)||(41336796-41336836)
[»] chr5 (6 HSPs)
chr5 (18-63)||(27565298-27565343)
chr5 (24-59)||(4273523-4273558)
chr5 (24-62)||(6725118-6725156)
chr5 (23-64)||(39257536-39257577)
chr5 (24-60)||(23137365-23137401)
chr5 (23-63)||(28981886-28981926)
[»] chr4 (2 HSPs)
chr4 (22-59)||(31059536-31059573)
chr4 (23-64)||(11802407-11802448)
[»] chr3 (6 HSPs)
chr3 (24-65)||(52324028-52324069)
chr3 (23-62)||(21574373-21574412)
chr3 (24-62)||(37308216-37308254)
chr3 (22-62)||(23785134-23785174)
chr3 (24-64)||(38975992-38976032)
chr3 (22-66)||(43116577-43116621)
[»] chr1 (7 HSPs)
chr1 (29-65)||(16322720-16322756)
chr1 (24-63)||(2035502-2035541)
chr1 (30-65)||(4768974-4769009)
chr1 (27-64)||(10131874-10131911)
chr1 (24-64)||(12477437-12477477)
chr1 (23-63)||(14128621-14128661)
chr1 (24-64)||(44936741-44936781)
[»] chr2 (3 HSPs)
chr2 (24-63)||(15171130-15171169)
chr2 (20-60)||(13864529-13864569)
chr2 (32-64)||(34005865-34005897)
[»] chr6 (6 HSPs)
chr6 (31-65)||(34404316-34404350)
chr6 (24-65)||(31461556-31461597)
chr6 (25-62)||(31807978-31808015)
chr6 (24-60)||(4247235-4247271)
chr6 (24-64)||(7713904-7713944)
chr6 (30-62)||(14340960-14340992)
[»] scaffold0426 (1 HSPs)
scaffold0426 (24-60)||(4026-4062)
[»] chr7 (1 HSPs)
chr7 (22-62)||(27481443-27481483)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 9380058 - 9379850
Alignment:
Q  18 aactatttatactataagcacttaattaagttatttatccaaacaagatcgaaccgcagagatgaaaatcatttcctacaaactaatgattatgttgtac 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9380058 aactatttatactataagcgcttaattaagttatttatccaaacaagatcgaaccgcagagatgaaaatcatttcctacaaactaatgattatgttgtac 9379959  T
Q  118 aaaaaacaaaatgtcccttgattttcctctgacaacttcttcaacaaaacaatgatgattctaacatcataaattttgcatatatttcctccacacatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9379958 aaaaaacaaaatgtcccttgattttcctctgacaacttcttcaacaaaacaatgatgattctaacatcataaattttgcatatatttcctccacacatat 9379859  T
Q  218 tttcctcct 226  Q
    |||||||||    
T  9379858 tttcctcct 9379850  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 43208283 - 43208324
Alignment:
Q  23 tttatactataagcacttaattaagttatttatccaaacaag 64  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  43208283 tttatactataagcacttaattaagttgtttatacaaacaag 43208324  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 27120031 - 27120064
Alignment:
Q  30 tataagcacttaattaagttatttatccaaacaa 63  Q
    ||||| ||||||||||||||||||||||||||||    
T  27120031 tataaacacttaattaagttatttatccaaacaa 27120064  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 6950256 - 6950216
Alignment:
Q  23 tttatactataagcacttaattaagttatttatccaaacaa 63  Q
    ||||| ||||||||||||||||||||| |||||| ||||||    
T  6950256 tttatgctataagcacttaattaagttgtttatctaaacaa 6950216  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 41336796 - 41336836
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaag 64  Q
    |||| ||||||||| ||||||||||| ||||||||||||||    
T  41336796 ttatgctataagcaattaattaagttgtttatccaaacaag 41336836  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 27565298 - 27565343
Alignment:
Q  18 aactatttatactataagcacttaattaagttatttatccaaacaa 63  Q
    ||||||||||||||||||| |||||||||| | |||||||||||||    
T  27565298 aactatttatactataagcgcttaattaagctgtttatccaaacaa 27565343  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 4273523 - 4273558
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaa 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  4273523 ttatactataagcacttaattaagttgtttatccaa 4273558  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 6725156 - 6725118
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaaca 62  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  6725156 ttatgctataagcacttaattaaattatttatccaaaca 6725118  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 39257536 - 39257577
Alignment:
Q  23 tttatactataagcacttaattaagttatttatccaaacaag 64  Q
    ||||| |||||||| |||||||||||| ||||||||||||||    
T  39257536 tttatgctataagcgcttaattaagttgtttatccaaacaag 39257577  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 23137401 - 23137365
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaa 60  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  23137401 ttatactataagcactcaattaagttgtttatccaaa 23137365  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 28981926 - 28981886
Alignment:
Q  23 tttatactataagcacttaattaagttatttatccaaacaa 63  Q
    ||||| ||||||||| |||||||||||| ||||||||||||    
T  28981926 tttatgctataagcaattaattaagttacttatccaaacaa 28981886  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 31059573 - 31059536
Alignment:
Q  22 atttatactataagcacttaattaagttatttatccaa 59  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31059573 atttatactaaaagcacttaattaagttatttatccaa 31059536  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 11802448 - 11802407
Alignment:
Q  23 tttatactataagcacttaattaagttatttatccaaacaag 64  Q
    |||||||||||| | ||||||||||||||||||| |||||||    
T  11802448 tttatactataaacgcttaattaagttatttatcaaaacaag 11802407  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 52324028 - 52324069
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaaga 65  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  52324028 ttatgctataagcacttaattaagttatttatacaaacaaga 52324069  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 21574412 - 21574373
Alignment:
Q  23 tttatactataagcacttaattaagttatttatccaaaca 62  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  21574412 tttatactataagcacttaattaagtagtttatccaaaca 21574373  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 37308216 - 37308254
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaaca 62  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaaaca 37308254  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 23785174 - 23785134
Alignment:
Q  22 atttatactataagcacttaattaagttatttatccaaaca 62  Q
    |||||| ||||||||||||||||||||| ||||| ||||||    
T  23785174 atttatgctataagcacttaattaagttgtttatgcaaaca 23785134  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 38975992 - 38976032
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaag 64  Q
    |||||| |||||| ||| |||||||||||||||||||||||    
T  38975992 ttataccataagcgcttgattaagttatttatccaaacaag 38976032  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 43116577 - 43116621
Alignment:
Q  22 atttatactataagcacttaattaagttatttatccaaacaagat 66  Q
    |||||| |||||| |||| ||||||||| ||||||||||||||||    
T  43116577 atttatgctataaacactaaattaagttgtttatccaaacaagat 43116621  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 16322756 - 16322720
Alignment:
Q  29 ctataagcacttaattaagttatttatccaaacaaga 65  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16322756 ctataagcacttaattaagttgtttatccaaacaaga 16322720  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 2035502 - 2035541
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaa 63  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  2035502 ttatactataagtgcttaattaagttatttatccaaacaa 2035541  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 4768974 - 4769009
Alignment:
Q  30 tataagcacttaattaagttatttatccaaacaaga 65  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4768974 tataagcgcttaattaagttatttatccaaacaaga 4769009  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 10131911 - 10131874
Alignment:
Q  27 tactataagcacttaattaagttatttatccaaacaag 64  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  10131911 tactataagcccttaattaagtcatttatccaaacaag 10131874  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 12477437 - 12477477
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaag 64  Q
    ||||||||| || ||||||||||||| ||||||||||||||    
T  12477437 ttatactatcagaacttaattaagttgtttatccaaacaag 12477477  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 14128621 - 14128661
Alignment:
Q  23 tttatactataagcacttaattaagttatttatccaaacaa 63  Q
    ||||||||||||||| ||| ||||||| |||||||||||||    
T  14128621 tttatactataagcatttatttaagttgtttatccaaacaa 14128661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 44936741 - 44936781
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaag 64  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
T  44936741 ttatactataagcatttaattaagttgtttatccatacaag 44936781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 15171169 - 15171130
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaa 63  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  15171169 ttatgctataaacacttaattaagttatttatccaaacaa 15171130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 13864569 - 13864529
Alignment:
Q  20 ctatttatactataagcacttaattaagttatttatccaaa 60  Q
    |||||||||||||||||| |||||||||||  |||||||||    
T  13864569 ctatttatactataagcaattaattaagttgcttatccaaa 13864529  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 34005897 - 34005865
Alignment:
Q  32 taagcacttaattaagttatttatccaaacaag 64  Q
    |||||||||||||||||| ||||||||||||||    
T  34005897 taagcacttaattaagttgtttatccaaacaag 34005865  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 34404350 - 34404316
Alignment:
Q  31 ataagcacttaattaagttatttatccaaacaaga 65  Q
    ||||||||||||||||||| |||||||||||||||    
T  34404350 ataagcacttaattaagttgtttatccaaacaaga 34404316  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 31461597 - 31461556
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaaga 65  Q
    ||||| |||||||||||||||||||| |||| ||||||||||    
T  31461597 ttataatataagcacttaattaagttgtttaaccaaacaaga 31461556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 31807978 - 31808015
Alignment:
Q  25 tatactataagcacttaattaagttatttatccaaaca 62  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  31807978 tataccataagcacttaattaagttgtttatccaaaca 31808015  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 4247235 - 4247271
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaa 60  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  4247235 ttatgctataagcacttaattaagttgtttatccaaa 4247271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 7713944 - 7713904
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaacaag 64  Q
    |||| |||||||||| |||||||||| ||||||||||||||    
T  7713944 ttatgctataagcacgtaattaagttctttatccaaacaag 7713904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 14340960 - 14340992
Alignment:
Q  30 tataagcacttaattaagttatttatccaaaca 62  Q
    |||||||||||||||||||| ||||||||||||    
T  14340960 tataagcacttaattaagttgtttatccaaaca 14340992  T

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Target: scaffold0426 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 4062 - 4026
Alignment:
Q  24 ttatactataagcacttaattaagttatttatccaaa 60  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  4062 ttatactataagcactcaattaagttgtttatccaaa 4026  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 27481443 - 27481483
Alignment:
Q  22 atttatactataagcacttaattaagttatttatccaaaca 62  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
T  27481443 atttatgctataagcacctaattaagttgtttatccaaaca 27481483  T

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