View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_36 (Length: 239)
Name: NF19264_low_36
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_36 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0008 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 6139277 - 6139499
Alignment:
| Q |
17 |
caaactggtgagtacatgcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6139277 |
caaactggtgagtacatgcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccgcattttcatttcaacttctaatg |
6139376 |
T |
|
| Q |
117 |
aacttagggaagagaggaacgctctcagggatgaggtatatatactttattaattacttgtggttatattttgtttttcattagtataaatgattttagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
6139377 |
aacttagggaagagaggaacgctctcagggatgaggtatatatactttcttaattacttgtgattattttttgtttttcattagtataaatgaatttagt |
6139476 |
T |
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| Q |
217 |
gtttaataatgtacttcactttc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
6139477 |
gtttaataatgtacttcactttc |
6139499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 6152228 - 6152315
Alignment:
| Q |
90 |
accacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttattaattacttgt |
177 |
Q |
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|||||| |||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
6152228 |
accacaatttcatttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgt |
6152315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 6126633 - 6126712
Alignment:
| Q |
97 |
tttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttattaattacttg |
176 |
Q |
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| T |
6126633 |
tttcatttcaacttctcatgaacttaggctagagaggaacatgctcatggttgaggtatatatactttcttagttacttg |
6126712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 6146042 - 6146116
Alignment:
| Q |
90 |
accacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatacttt |
164 |
Q |
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| T |
6146042 |
accacaatttaatttcaacttctcatgaacttaggccagagaggaacaggcacagggttgaggtacatatacttt |
6146116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 7995 - 7776
Alignment:
| Q |
18 |
aaactggtgagtacatgcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatga |
117 |
Q |
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||||||| |||| |||||| | |||||||||||| |||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||| |||| |
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| T |
7995 |
aaactggcgagt-catgcaaaacaattcaacattggcaagatcagagaatccagctcgtcctggtggtaataagcgcattttcatttcaacttctgatga |
7897 |
T |
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| Q |
118 |
acttagggaagagaggaacgctctcagggatgaggtatatatactttattaattacttgtggttatattttgtttttcattagtataaatgattttagtg |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||| ||||||||||||||||| ||||||| |
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| T |
7896 |
acttagggaagggaggaacgctctcagggatgaggtatatatactttcttaattacttgtgattatttttggttgttcattagtataaatgaatttagtg |
7797 |
T |
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| Q |
218 |
tttaataatgtacttcactttc |
239 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
7796 |
-ttaataatgtgcttcactttc |
7776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 18521 - 18358
Alignment:
| Q |
74 |
cgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttattaattac |
173 |
Q |
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|||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18521 |
cgtcctggtggtaataagcgcattttcatttcaacttctgatgaacttagggaagggaggaacgctctcagggatgaggtatatatactttcttaattac |
18422 |
T |
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| Q |
174 |
ttgtggttatattttgtttttcattagtataaatgattttagtgtttaataatgtacttcacttt |
238 |
Q |
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||||| |||| ||| ||| ||||||||||||||||| ||||||| |||||||||| ||||||||| |
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| T |
18421 |
ttgtgattatttttggttgttcattagtataaatgaatttagtg-ttaataatgtgcttcacttt |
18358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 18594 - 18543
Alignment:
| Q |
18 |
aaactggtgagtacatgcagaccaattcaacattcgcaagatcagagaatcca |
70 |
Q |
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| T |
18594 |
aaactggcgagt-catgcaaaacaattcaacattggcaagatcagagaatcca |
18543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 25364074 - 25364295
Alignment:
| Q |
16 |
tcaaactggtgagtacatgcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaat |
115 |
Q |
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||||||||| |||| |||||||| |||||||||||| |||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||| || |
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| T |
25364074 |
tcaaactggcgagt-catgcagaacaattcaacattggcaagatcagagaatccagctctttctggcggtaataaccgcattttcatttcaacttctgat |
25364172 |
T |
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| Q |
116 |
gaacttagggaagagaggaacgctctcagggatgaggtatatatactttattaattacttgtggttatattttgtttttcattagtataaatgattttag |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||| ||| ||| |||||| |||||||||| ||||| |
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| T |
25364173 |
gaacttagggaagagaggaacgctctcatggatgaggtatatatgctttcttaattacttgtgattatttttggttgttcattggtataaatgaatttag |
25364272 |
T |
|
| Q |
216 |
tgtttaataatgtacttcactttc |
239 |
Q |
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|| |||||||||| |||||||||| |
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| T |
25364273 |
tg-ttaataatgtgcttcactttc |
25364295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 7917897 - 7917821
Alignment:
| Q |
29 |
tacatgcagaccaattcaacattcgcaagatcagagaatccatctcgtcctggcggtaataaccacattttcatttc |
105 |
Q |
| |
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|||||||| || |||||||||| ||||| |||||||||||| ||||| |||||||||||||| | ||||||||||| |
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| T |
7917897 |
tacatgcaaactgattcaacattggcaagttcagagaatccagctcgtgctggcggtaataacgatattttcatttc |
7917821 |
T |
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