View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19264_low_37 (Length: 238)
Name: NF19264_low_37
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13473458 - 13473680
Alignment:
| Q |
1 |
caattttacagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13473458 |
caattttacagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagt |
13473557 |
T |
|
| Q |
101 |
ctttcccaaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
13473558 |
ctttcccaaatagatcggcttggtgtgttagatttgtcacataatcaattatctggagagattccattgagcacacaactacaaagtttcaatccgtcaa |
13473657 |
T |
|
| Q |
201 |
gttacgaagataatcttgatctt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13473658 |
gttacgaagataatcttgatctt |
13473680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 13893481 - 13893696
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13893481 |
acagggaaaattccttcaaatatcggaaaattaacatcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccttctagtctttcca |
13893580 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
13893581 |
aaatagatcggattggtgtgttagatctgtcacataatcaattgtctggagaaattccaacgagtacacaactacaaagtttcaatgcctcaagttacga |
13893680 |
T |
|
| Q |
208 |
agataatcttgatctt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13893681 |
agataatcttgatctt |
13893696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 13875777 - 13875992
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||| | ||||||||||| | ||||||||||||||||||||||| | |
|
|
| T |
13875777 |
acagggaaaattccttcaagaattggaaagctaacatcacttgactttcttgatttgtctagaaataagttgattggttcaattccttctagtctttctc |
13875876 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
13875877 |
aaatagaccggcttggtgtgttagatttgtcacataaccaattatctggagagattccaaagagtacacaactacaaagtttcaatgcctcaaattacga |
13875976 |
T |
|
| Q |
208 |
agataatcttgatctt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13875977 |
agataatcttgatctt |
13875992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 14110064 - 14109849
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||| ||| | |||||||||||| | ||||| || | |
|
|
| T |
14110064 |
acagggaaaattccttcaaatattggaaatctaacatcacttgactttcttgatttgtcacgaaataacttgtttggttcaattcctcccagtctctctc |
14109965 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14109964 |
acatagaccggctaagtgtgttagatttgtcacataatcaattatctggagaaattccaacgagtacacaactacaaagtttcaatccctcaagttacga |
14109865 |
T |
|
| Q |
208 |
agataatcttgatctt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14109864 |
agataatcttgatctt |
14109849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 14046991 - 14046777
Alignment:
| Q |
9 |
cagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccca |
108 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| |||||||||| ||||| ||| |||||||||||||||| |||||||||||| ||||||| || || |
|
|
| T |
14046991 |
cagggaaaattccatcaaatattggaaatctaacctcacttgactcccttgatttgtcacgaaataagttgcttggttcaattcctcctagtctatctca |
14046892 |
T |
|
| Q |
109 |
aatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacgaa |
208 |
Q |
| |
|
|||||| |||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14046891 |
aatagaccggcttagtgtgttagatctgtcacataatcaattatctggcaagattccaacgagtacacaactacaaagtttcaatccctcaagttacgaa |
14046792 |
T |
|
| Q |
209 |
gataatcttgatctt |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14046791 |
gataatcttgatctt |
14046777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 14014735 - 14014523
Alignment:
| Q |
11 |
gggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttcccaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||| || || ||||||| ||||| |||||||||| ||||||||||| |||| |
|
|
| T |
14014735 |
gggaaaattccttcaaatattggaaagctaacatcacttgactttcttgatttctcaagaaataatttgctttgttcaattccatctagtctttcacaaa |
14014636 |
T |
|
| Q |
111 |
tagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacgaaga |
210 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
14014635 |
tacaccggcttggtgtgttagatttgtcacataatcaattatcgggagaaattccaaggagtacacaactacaaagtttcaatgcctcaagttacgaaga |
14014536 |
T |
|
| Q |
211 |
taatcttgatctt |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14014535 |
taatcttgatctt |
14014523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 13931951 - 13931736
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| |||||||||| |||||| ||| | |||||||||||||| |||||||||||| ||||||| || | |
|
|
| T |
13931951 |
acagggaaaattccatcaaatattggaaatctaacttcacttgactctcttgatttgtctcgaaataagttgcttggttcaattcctcctagtctctctc |
13931852 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
13931851 |
aaatagactggcttagtgtgttagatctgtcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaacgccacaagttacga |
13931752 |
T |
|
| Q |
208 |
agataatcttgatctt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13931751 |
agataatcttgatctt |
13931736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 13911453 - 13911235
Alignment:
| Q |
5 |
tttacagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtcttt |
104 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||| |||||||||||||||||| ||| |||||||||| ||||| |||||||||||| ||||||| | |
|
|
| T |
13911453 |
tttacagggaaaattccttcaaatttcggaaagttaacatcacttgactttcttgatttgtcacgaaataacttgcttggttcaattcctcctagtctct |
13911354 |
T |
|
| Q |
105 |
cccaaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagtta |
204 |
Q |
| |
|
| || ||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
13911353 |
ctcacatagaccgtcttagtgtgttagatttgtcacataatcaattatctggagagattccaacaagtacacaactacaaagtttcaacgccacaagtta |
13911254 |
T |
|
| Q |
205 |
cgaagataatcttgatctt |
223 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13911253 |
cgaagataatcttgatctt |
13911235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 14024869 - 14024658
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
14024869 |
acagggaaaattccttcaagaattggaaagttaatatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttccc |
14024770 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
||||||||| |||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||| |||| || |
|
|
| T |
14024769 |
gaatagatcgacttgctgtgctagatttgtcacataatcaattatctggagaaattccaacgagtacacaactacaaagttttgattcctcatgttatga |
14024670 |
T |
|
| Q |
208 |
agataatcttga |
219 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14024669 |
agataatcttga |
14024658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 13863307 - 13863522
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||||||||| |||||||| ||| ||| ||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
13863307 |
acagggaaaattccttcaaatatcggaaggttaacatcacttgaatttcttgatttgtcacaaaacaagttgtttggttcaattccttctagtctttccc |
13863406 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||||||||||| || ||||||| |||||||||||||||| |||||||| | ||| |||||| |
|
|
| T |
13863407 |
aaatagatcggcttggtgggttagatgtgtcacataatcaattatctggtgaaattccaaagagtacacaactacaaggtttcaatgcctcattttacga |
13863506 |
T |
|
| Q |
208 |
agataatcttgatctt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13863507 |
agataatcttgatctt |
13863522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 14022306 - 14022092
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| |||||||||||||||||| || ||| ||| ||||||| |||| |||||||||||||||||| | |
|
|
| T |
14022306 |
acaggaaaaattccttcaaatattggaaagctaacatcacttgactttcttgatttatcacaaaacaagttgcgtggtt-aattccttctagtctttctc |
14022208 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
|||| ||||| ||| ||||||||||| | |||||||||||||||| |||||||||||||||| ||||||| |||||||||||| |||| ||| ||||||| |
|
|
| T |
14022207 |
aaattgatcgacttagtgtgttagatgtgtcacataatcaattatatggagagattccaacgtgtacacagctacaaagtttcgatccctcatgttacga |
14022108 |
T |
|
| Q |
208 |
agataatcttgatctt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14022107 |
agataatcttgatctt |
14022092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 14084258 - 14084043
Alignment:
| Q |
8 |
acagggaaaattccttcaaatattggaaaactaagatcacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttccc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||| |||||||||||| |||||| || | |
|
|
| T |
14084258 |
acagggaaaattccttcaaatattggaaatctagcatcacttgactttcttgatttttcacgaaataagttgcttggttcaattcctcatagtctctctc |
14084159 |
T |
|
| Q |
108 |
aaatagatcggcttggtgtgttagatttatcacataatcaattatctggagagattccaacgagtacacaactacaaagtttcaatccgtcaagttacga |
207 |
Q |
| |
|
||||||| |||||| ||||||||||||| || |||||||||||||| ||||| ||||||| |||||||||||| |||||||| || | ||| ||||| | |
|
|
| T |
14084158 |
aaatagaccggcttagtgtgttagatttgtcgcataatcaattatcgggagaaattccaaagagtacacaacttcaaagttttgatgcctcacgttacaa |
14084059 |
T |
|
| Q |
208 |
agataatcttgatctt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14084058 |
agataatcttgatctt |
14084043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University